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The map label for this gene is ygiD [H]

Identifier: 186477473

GI number: 186477473

Start: 3080015

End: 3080800

Strand: Direct

Name: ygiD [H]

Synonym: Bphy_2725

Alternate gene names: 186477473

Gene position: 3080015-3080800 (Clockwise)

Preceding gene: 186477472

Following gene: 186477475

Centisome position: 88.53

GC content: 64.76

Gene sequence:

>786_bases
ATGACCCGCTTGCCCTCTCTCTTCCTGTCGCACGGTGCGCCGACGCTGCCGATCGACCCGTCGATGCCGCGCGCGCAGTT
CGCATCGTTGTCGTCGGAAGTGCCGCGTCCAAAAGCCATCCTTATGCTGTCCGCGCATTGGGGCACGCTGCAGCCCGCAG
CGAGCACGTCGGAAGCGCCTGAGACGATTCACGACTTCTACGGCTTCCCGCGTCAGCTGTACGAAATCCAATACCCGGCG
CCGGGCGCGCCTGATGTCGCACGCCGCGCGGCTGAGTTGCTCGGCGGCGAAGGTATTCCGACGGCGACGCAGCCTCACGG
TCTCGATCACGGCGCGTGGGTGCCGATGCTGCTGCTGTTCCCTCACGCGGACGTGCCTATTGCACAACTGTCGATCCAGC
CTCAGCTCGATCCCGCGCATCATTTCCGCGTGGGCCGTGCGCTTCGTCCGCTGCAGGAGGAAGGCGTGATGATCGTCGGA
TCCGGGCAGATCACGCACAACCTGCGCGAAGCGGATTTTTCAGCACGTCCGGAAGACGCGGATCCGCGCGTTACCGAGTT
CACCGACTGGTTCGAAACGCGCCTTGCCGCACGCCATATCGATGCGCTGCTCGACTACCGTCGTCAGGCTCCGCACGCGG
AGTTCATGCATCCGACCGACGAGCATCTGCTGCCCGTGTTTGCAGCCCTCGGCGCCGCACCGGATGACTACGCGCTCGGC
ATTCAGTCGCTCGGTACGTTCCAGCGCTCGCTGGCGATGACGAACTACGTGTTCGGCTACGCCTGA

Upstream 100 bases:

>100_bases
ATTCACAACTGCCGCGAGACAATCAAATGCAGATTTGACCGTTTATCAAACGGCAGTGCGGCCTTATATTCGGTTCAAGC
TAACCCTTTGTCGCACTGCC

Downstream 100 bases:

>100_bases
TCCCCGCACGACACATCGCGTCGCGCAAACTAAAAAGCCCGCCAGAATTCTGGCGGGCTTCTTCTTGTGTCAGACAGTCA
AGCGCTGAAGATCAGGCGCC

Product: extradiol ring-cleavage dioxygenase class III protein subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTRLPSLFLSHGAPTLPIDPSMPRAQFASLSSEVPRPKAILMLSAHWGTLQPAASTSEAPETIHDFYGFPRQLYEIQYPA
PGAPDVARRAAELLGGEGIPTATQPHGLDHGAWVPMLLLFPHADVPIAQLSIQPQLDPAHHFRVGRALRPLQEEGVMIVG
SGQITHNLREADFSARPEDADPRVTEFTDWFETRLAARHIDALLDYRRQAPHAEFMHPTDEHLLPVFAALGAAPDDYALG
IQSLGTFQRSLAMTNYVFGYA

Sequences:

>Translated_261_residues
MTRLPSLFLSHGAPTLPIDPSMPRAQFASLSSEVPRPKAILMLSAHWGTLQPAASTSEAPETIHDFYGFPRQLYEIQYPA
PGAPDVARRAAELLGGEGIPTATQPHGLDHGAWVPMLLLFPHADVPIAQLSIQPQLDPAHHFRVGRALRPLQEEGVMIVG
SGQITHNLREADFSARPEDADPRVTEFTDWFETRLAARHIDALLDYRRQAPHAEFMHPTDEHLLPVFAALGAAPDDYALG
IQSLGTFQRSLAMTNYVFGYA
>Mature_260_residues
TRLPSLFLSHGAPTLPIDPSMPRAQFASLSSEVPRPKAILMLSAHWGTLQPAASTSEAPETIHDFYGFPRQLYEIQYPAP
GAPDVARRAAELLGGEGIPTATQPHGLDHGAWVPMLLLFPHADVPIAQLSIQPQLDPAHHFRVGRALRPLQEEGVMIVGS
GQITHNLREADFSARPEDADPRVTEFTDWFETRLAARHIDALLDYRRQAPHAEFMHPTDEHLLPVFAALGAAPDDYALGI
QSLGTFQRSLAMTNYVFGYA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=261, Percent_Identity=36.0153256704981, Blast_Score=166, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28706; Mature: 28575

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLPSLFLSHGAPTLPIDPSMPRAQFASLSSEVPRPKAILMLSAHWGTLQPAASTSEAP
CCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCH
ETIHDFYGFPRQLYEIQYPAPGAPDVARRAAELLGGEGIPTATQPHGLDHGAWVPMLLLF
HHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPIAQLSIQPQLDPAHHFRVGRALRPLQEEGVMIVGSGQITHNLREADFSARPEDA
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHCCCCCCCCCC
DPRVTEFTDWFETRLAARHIDALLDYRRQAPHAEFMHPTDEHLLPVFAALGAAPDDYALG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
IQSLGTFQRSLAMTNYVFGYA
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRLPSLFLSHGAPTLPIDPSMPRAQFASLSSEVPRPKAILMLSAHWGTLQPAASTSEAP
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCH
ETIHDFYGFPRQLYEIQYPAPGAPDVARRAAELLGGEGIPTATQPHGLDHGAWVPMLLLF
HHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
PHADVPIAQLSIQPQLDPAHHFRVGRALRPLQEEGVMIVGSGQITHNLREADFSARPEDA
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHCCCCCCCCCC
DPRVTEFTDWFETRLAARHIDALLDYRRQAPHAEFMHPTDEHLLPVFAALGAAPDDYALG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
IQSLGTFQRSLAMTNYVFGYA
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]