Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 186477457

GI number: 186477457

Start: 3063592

End: 3064917

Strand: Direct

Name: ugpB [H]

Synonym: Bphy_2709

Alternate gene names: 186477457

Gene position: 3063592-3064917 (Clockwise)

Preceding gene: 186477456

Following gene: 186477458

Centisome position: 88.05

GC content: 61.16

Gene sequence:

>1326_bases
ATGCATTGCAAGCCGCTGTTCCGTTCGCTGTCCGTCGCTGCTGTTCTCGGCTTCGGCGCATATCAAAGCGCCTACGCCAC
CACCGAAATCCAGTTCTGGCACGCGATGGAAGCCGCGCTCGGCGAGCGCCTGAACACGATCGCCAACGACTTCAATGCAT
CGCAGAGCGATTACAAGATCGTCCCGGTCTTCAAGGGCACCTACGACCAGACGCTTGCAGCAGGCATCGCCGCTTATCGC
AGTGGCAACGCGCCCGCGATCCTGCAAGTCTACGAAGTCGGCACGGCAACGATGATGCAGGCGAAGAAAGCCGTCGTCCC
CGTCTCCGAGGTATTCAGGCAGGCGGGCATGACGCTCGACGAAAAAGCGTTCGTACCGACCATCGCCAGCTACTACAGCG
ACTCGAAAACGGGCCATCTGATCTCGATGCCGTTCAACAGCTCGACGCCCGTCCTCTACTACAACAAGGACGCCTTCAAG
AAGGCCGGCCTCGATCCGAACACGCCGCCGAAGACCTGGGCCGAACTCGAACAGGACGCGCAAAAACTGAAGGCCGCGGG
CATGTCGTGCGGTTATTCGTCGGGCTGGCAAAGTTGGATTCAGCTAGAGAATTACAGCGCGTGGCACGGCGCGCCGTTCG
CGACGGAGAACAACGGCTTCGACGGCGCCGACGCAAAGCTCGAATTCAACAAGCCGCTGCAGGTCGCGCACATCAGCTTC
CTGCAGAAAATGGCGAAGGATGGCACGTTCACCTATGCGGGCCGCAAGGATGAGCCGGTGTCGAAGTTCTATAGCGGCGA
CTGCGGGATCATCACGAATTCGTCCGGCTCGCTCGCGACGATCCGCAAGTACGCGAAGTTCAACTTCGGTACGGGCACGA
TGCCGTACGACGCAAACGTGAAGGGCGCGCCGCAGAACGCGATCATCGGCGGCGCCAGCCTGTGGGTGCTGTCGGGCAAG
GACCCCGCCGTCTACAAGGGCGTCGCGAAGTTCCTGGCGTATCTCAGTTCGGCGCCCGTCGCCGCGAAGTGGCATCAGGA
CACGGGCTACCTGCCCGTCACCACAGCCGCCTATGAATTGACCCAGCAGCAAGGCTTCTACGAGAAGAACCCCGGCAGCG
ATACGGCCATCAAGCAGATGCTCAACAAGCCGCCTCTGCCGTACACGAAGGGCCTGCGTCTAGGCAACATGCCGCAGATC
CGCACGATCATCGACGAAGAACTCGAACAGGTCTGGGCCGACAAGAAGACGCCCAAGGAAGCGCTCGATTCGTCGGTGTC
GCGCGGCGACGAACTGCTGCGCCGCTTCGAGAAGGCGGGTAGTTAA

Upstream 100 bases:

>100_bases
GAGACTTACATATAGAAGACTCACCGACGCTTTCCTGTCATCGATCACAACTAGAATCGCGCGACCGCAATTCGCGCTTT
CCACCATCAGGAGACCCTCG

Downstream 100 bases:

>100_bases
TCCGCGCGTTAATCCACGCGAAGGGCGTGCCTTTCTGCGAGTCACAACATGTGGCAAACGCAAGTCGCGCCCGCCTGGTC
ACTTTTGAAAGGGACGTCGA

Product: glycerol-3-phosphate transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MHCKPLFRSLSVAAVLGFGAYQSAYATTEIQFWHAMEAALGERLNTIANDFNASQSDYKIVPVFKGTYDQTLAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVVPVSEVFRQAGMTLDEKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFK
KAGLDPNTPPKTWAELEQDAQKLKAAGMSCGYSSGWQSWIQLENYSAWHGAPFATENNGFDGADAKLEFNKPLQVAHISF
LQKMAKDGTFTYAGRKDEPVSKFYSGDCGIITNSSGSLATIRKYAKFNFGTGTMPYDANVKGAPQNAIIGGASLWVLSGK
DPAVYKGVAKFLAYLSSAPVAAKWHQDTGYLPVTTAAYELTQQQGFYEKNPGSDTAIKQMLNKPPLPYTKGLRLGNMPQI
RTIIDEELEQVWADKKTPKEALDSSVSRGDELLRRFEKAGS

Sequences:

>Translated_441_residues
MHCKPLFRSLSVAAVLGFGAYQSAYATTEIQFWHAMEAALGERLNTIANDFNASQSDYKIVPVFKGTYDQTLAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVVPVSEVFRQAGMTLDEKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFK
KAGLDPNTPPKTWAELEQDAQKLKAAGMSCGYSSGWQSWIQLENYSAWHGAPFATENNGFDGADAKLEFNKPLQVAHISF
LQKMAKDGTFTYAGRKDEPVSKFYSGDCGIITNSSGSLATIRKYAKFNFGTGTMPYDANVKGAPQNAIIGGASLWVLSGK
DPAVYKGVAKFLAYLSSAPVAAKWHQDTGYLPVTTAAYELTQQQGFYEKNPGSDTAIKQMLNKPPLPYTKGLRLGNMPQI
RTIIDEELEQVWADKKTPKEALDSSVSRGDELLRRFEKAGS
>Mature_441_residues
MHCKPLFRSLSVAAVLGFGAYQSAYATTEIQFWHAMEAALGERLNTIANDFNASQSDYKIVPVFKGTYDQTLAAGIAAYR
SGNAPAILQVYEVGTATMMQAKKAVVPVSEVFRQAGMTLDEKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFK
KAGLDPNTPPKTWAELEQDAQKLKAAGMSCGYSSGWQSWIQLENYSAWHGAPFATENNGFDGADAKLEFNKPLQVAHISF
LQKMAKDGTFTYAGRKDEPVSKFYSGDCGIITNSSGSLATIRKYAKFNFGTGTMPYDANVKGAPQNAIIGGASLWVLSGK
DPAVYKGVAKFLAYLSSAPVAAKWHQDTGYLPVTTAAYELTQQQGFYEKNPGSDTAIKQMLNKPPLPYTKGLRLGNMPQI
RTIIDEELEQVWADKKTPKEALDSSVSRGDELLRRFEKAGS

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=417, Percent_Identity=69.3045563549161, Blast_Score=627, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48146; Mature: 48146

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHCKPLFRSLSVAAVLGFGAYQSAYATTEIQFWHAMEAALGERLNTIANDFNASQSDYKI
CCCHHHHHHHHHHHHHHHCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
VPVFKGTYDQTLAAGIAAYRSGNAPAILQVYEVGTATMMQAKKAVVPVSEVFRQAGMTLD
EEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
EKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFKKAGLDPNTPPKTWAELEQDA
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHH
QKLKAAGMSCGYSSGWQSWIQLENYSAWHGAPFATENNGFDGADAKLEFNKPLQVAHISF
HHHHHHCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
LQKMAKDGTFTYAGRKDEPVSKFYSGDCGIITNSSGSLATIRKYAKFNFGTGTMPYDANV
HHHHHCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
KGAPQNAIIGGASLWVLSGKDPAVYKGVAKFLAYLSSAPVAAKWHQDTGYLPVTTAAYEL
CCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEHHHHHHH
TQQQGFYEKNPGSDTAIKQMLNKPPLPYTKGLRLGNMPQIRTIIDEELEQVWADKKTPKE
HHHCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ALDSSVSRGDELLRRFEKAGS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHCKPLFRSLSVAAVLGFGAYQSAYATTEIQFWHAMEAALGERLNTIANDFNASQSDYKI
CCCHHHHHHHHHHHHHHHCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
VPVFKGTYDQTLAAGIAAYRSGNAPAILQVYEVGTATMMQAKKAVVPVSEVFRQAGMTLD
EEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
EKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFKKAGLDPNTPPKTWAELEQDA
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHH
QKLKAAGMSCGYSSGWQSWIQLENYSAWHGAPFATENNGFDGADAKLEFNKPLQVAHISF
HHHHHHCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHH
LQKMAKDGTFTYAGRKDEPVSKFYSGDCGIITNSSGSLATIRKYAKFNFGTGTMPYDANV
HHHHHCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
KGAPQNAIIGGASLWVLSGKDPAVYKGVAKFLAYLSSAPVAAKWHQDTGYLPVTTAAYEL
CCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEHHHHHHH
TQQQGFYEKNPGSDTAIKQMLNKPPLPYTKGLRLGNMPQIRTIIDEELEQVWADKKTPKE
HHHCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ALDSSVSRGDELLRRFEKAGS
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA