| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is gntP [H]
Identifier: 186477326
GI number: 186477326
Start: 2898583
End: 2899944
Strand: Reverse
Name: gntP [H]
Synonym: Bphy_2578
Alternate gene names: 186477326
Gene position: 2899944-2898583 (Counterclockwise)
Preceding gene: 186477327
Following gene: 186477325
Centisome position: 83.35
GC content: 62.11
Gene sequence:
>1362_bases ATGGAAGCTGTCCACGGCAGCATGCTGCTGATCTACGCCGTGATTGCCATTGCAGTGCTGATCCTCATGATCACGCGCTT CAAGGTCTATCCGTTCCTCGTCCTTATCATCGTCTCGTTGCTGCTCGGCCTTGCCGTCGGCATGCCGGCGGGGACGATCG TGAAATCGTTCGAGACAGGTAACGGCAACACGCTGGGCCATATTGCGATCGTCGTCGGTCTTGGCACGATGCTCGGCAAG ATGATGGCCGAATCGGGCGGCGCCGAGCGCGTCGCCACGACGTTGATCAACTGGTTCGGTGAGAAAAACATTCACTGGGC GATGATGTTCGTCGCGATCATCGTCGGCTTGCCGGTGTTCTTCGAAGTCGGCTTCGTGCTGCTGATTCCGATCGCCTTCA ACGTCGCGAAGCGCACGGGCAAATCGCTGCTGCTGATCGGCCTGCCGATGGTCGCGGGCCTGTCCGTCGTGCACGGTCTG ATTCCGCCGCACCCGGCCGCGCTGCTCGCCGTGCAGGCGTATCACGCGGATATCGGTCGCACGATCGCGTACGGTCTGAT CGTCGGCGTGCCGACGGCGATCGTCGCCGGTCCGCTGTTCGCGCTGCTGATCCATCGTCACATCAAGCTGGCGGCGAACA ATCCGCTTGCCGCGCAGTTCATTGATACGGAGCATAAAGAGGGCACGCGCGATCTGCCGGGCTTCGGGATCACGCTGTTC ACGATTTTGCTGCCCGTGATTCTGATGCTGGTCGGCAGCTGGGCGGATCTCGTGTTCGCGCCGAAGACGACCGCGAACGA TCTGCTGCGATTCATCGGTACATCCGACGTCGCGCTGCTGATCGCCGTGCTCGTCAGCTTCTGGACGTTTGGCGCGAAAC GCGGCTTCAATCGCGAGCAGATTCAGAAGTTTTGCGGCGACTGTCTGGCGCCGATCGCGGGCATTACGCTGATCGTCGGT GCGGGCGGTGGTTTCGGCCGCGTGCTGATGGATAGCGGCATCTCGAAGGAAATCGTCGCGACGGCAACGGCTGCGCATCT GTCGCCGCTGCTGTTCGGCTGGTTCGTCGCCGCGTTGATCCGTCTCGCGACGGGTTCGGCGACGGTCGCGATGACGACGG CGTGCGGCATCGTCGCGCCGGTTGCGGCGGCGAGCGGCGTGCAGGTCAAGCCTGAGTTGCTGGTGCTGGCGACGGGTTCG GGCTCGCTGATTTTCTCGCATGTCAACGACGGCGGCTTCTGGCTGATCAAGGAGTATTTCGGCATGACGGTGGGGCAGAC GTTTCAGACGTGGTCGCTCTGCGAAACCATCATTTCGCTGATGGGTCTGGGTTTGACCTTCGCGTTGGCGGCGGTCCTGT AA
Upstream 100 bases:
>100_bases ACGCACCCAATCCTGAGGGCGCTTTCAGCATCCGGAAGCGGGCGAGGTGCCGCAGCACTTTGCAATTCGAACCAACAAAC CAAAGCAAAGGAGGAGCTTC
Downstream 100 bases:
>100_bases GGAGTTTCAAATGATTTTGATCGCGATGGGCGTATCGGGCGCCGGCAAGACCCGGATTGGGGAATTGCTGGCTGAGCGGC TCAAGTGCAGTTTCACCGAC
Product: gluconate transporter
Products: gluconate [Cytoplasm]; L-idonate [Cytoplasm]; Proton [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MEAVHGSMLLIYAVIAIAVLILMITRFKVYPFLVLIIVSLLLGLAVGMPAGTIVKSFETGNGNTLGHIAIVVGLGTMLGK MMAESGGAERVATTLINWFGEKNIHWAMMFVAIIVGLPVFFEVGFVLLIPIAFNVAKRTGKSLLLIGLPMVAGLSVVHGL IPPHPAALLAVQAYHADIGRTIAYGLIVGVPTAIVAGPLFALLIHRHIKLAANNPLAAQFIDTEHKEGTRDLPGFGITLF TILLPVILMLVGSWADLVFAPKTTANDLLRFIGTSDVALLIAVLVSFWTFGAKRGFNREQIQKFCGDCLAPIAGITLIVG AGGGFGRVLMDSGISKEIVATATAAHLSPLLFGWFVAALIRLATGSATVAMTTACGIVAPVAAASGVQVKPELLVLATGS GSLIFSHVNDGGFWLIKEYFGMTVGQTFQTWSLCETIISLMGLGLTFALAAVL
Sequences:
>Translated_453_residues MEAVHGSMLLIYAVIAIAVLILMITRFKVYPFLVLIIVSLLLGLAVGMPAGTIVKSFETGNGNTLGHIAIVVGLGTMLGK MMAESGGAERVATTLINWFGEKNIHWAMMFVAIIVGLPVFFEVGFVLLIPIAFNVAKRTGKSLLLIGLPMVAGLSVVHGL IPPHPAALLAVQAYHADIGRTIAYGLIVGVPTAIVAGPLFALLIHRHIKLAANNPLAAQFIDTEHKEGTRDLPGFGITLF TILLPVILMLVGSWADLVFAPKTTANDLLRFIGTSDVALLIAVLVSFWTFGAKRGFNREQIQKFCGDCLAPIAGITLIVG AGGGFGRVLMDSGISKEIVATATAAHLSPLLFGWFVAALIRLATGSATVAMTTACGIVAPVAAASGVQVKPELLVLATGS GSLIFSHVNDGGFWLIKEYFGMTVGQTFQTWSLCETIISLMGLGLTFALAAVL >Mature_453_residues MEAVHGSMLLIYAVIAIAVLILMITRFKVYPFLVLIIVSLLLGLAVGMPAGTIVKSFETGNGNTLGHIAIVVGLGTMLGK MMAESGGAERVATTLINWFGEKNIHWAMMFVAIIVGLPVFFEVGFVLLIPIAFNVAKRTGKSLLLIGLPMVAGLSVVHGL IPPHPAALLAVQAYHADIGRTIAYGLIVGVPTAIVAGPLFALLIHRHIKLAANNPLAAQFIDTEHKEGTRDLPGFGITLF TILLPVILMLVGSWADLVFAPKTTANDLLRFIGTSDVALLIAVLVSFWTFGAKRGFNREQIQKFCGDCLAPIAGITLIVG AGGGFGRVLMDSGISKEIVATATAAHLSPLLFGWFVAALIRLATGSATVAMTTACGIVAPVAAASGVQVKPELLVLATGS GSLIFSHVNDGGFWLIKEYFGMTVGQTFQTWSLCETIISLMGLGLTFALAAVL
Specific function: Transport Of Gluconate And L-Idonate. [C]
COG id: COG2610
COG function: function code GE; H+/gluconate symporter and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gntP permease family [H]
Homologues:
Organism=Escherichia coli, GI48994935, Length=436, Percent_Identity=43.8073394495413, Blast_Score=353, Evalue=2e-98, Organism=Escherichia coli, GI1790716, Length=446, Percent_Identity=43.0493273542601, Blast_Score=352, Evalue=3e-98, Organism=Escherichia coli, GI2367370, Length=441, Percent_Identity=40.3628117913832, Blast_Score=298, Evalue=4e-82, Organism=Escherichia coli, GI1788707, Length=442, Percent_Identity=38.9140271493213, Blast_Score=294, Evalue=8e-81, Organism=Escherichia coli, GI1790776, Length=439, Percent_Identity=33.7129840546697, Blast_Score=262, Evalue=3e-71, Organism=Escherichia coli, GI48994939, Length=437, Percent_Identity=35.2402745995423, Blast_Score=243, Evalue=2e-65, Organism=Escherichia coli, GI1789097, Length=453, Percent_Identity=34.4370860927152, Blast_Score=226, Evalue=2e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003474 [H]
Pfam domain/function: PF02447 GntP_permease [H]
EC number: NA
Molecular weight: Translated: 47596; Mature: 47596
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAVHGSMLLIYAVIAIAVLILMITRFKVYPFLVLIIVSLLLGLAVGMPAGTIVKSFETG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECC NGNTLGHIAIVVGLGTMLGKMMAESGGAERVATTLINWFGEKNIHWAMMFVAIIVGLPVF CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH FEVGFVLLIPIAFNVAKRTGKSLLLIGLPMVAGLSVVHGLIPPHPAALLAVQAYHADIGR HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TIAYGLIVGVPTAIVAGPLFALLIHRHIKLAANNPLAAQFIDTEHKEGTRDLPGFGITLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCCCCCCCHHHHH TILLPVILMLVGSWADLVFAPKTTANDLLRFIGTSDVALLIAVLVSFWTFGAKRGFNREQ HHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH IQKFCGDCLAPIAGITLIVGAGGGFGRVLMDSGISKEIVATATAAHLSPLLFGWFVAALI HHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RLATGSATVAMTTACGIVAPVAAASGVQVKPELLVLATGSGSLIFSHVNDGGFWLIKEYF HHHCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCCEEEEEECCCCEEEEHHHH GMTVGQTFQTWSLCETIISLMGLGLTFALAAVL CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MEAVHGSMLLIYAVIAIAVLILMITRFKVYPFLVLIIVSLLLGLAVGMPAGTIVKSFETG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECC NGNTLGHIAIVVGLGTMLGKMMAESGGAERVATTLINWFGEKNIHWAMMFVAIIVGLPVF CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH FEVGFVLLIPIAFNVAKRTGKSLLLIGLPMVAGLSVVHGLIPPHPAALLAVQAYHADIGR HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH TIAYGLIVGVPTAIVAGPLFALLIHRHIKLAANNPLAAQFIDTEHKEGTRDLPGFGITLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCCCCCCCHHHHH TILLPVILMLVGSWADLVFAPKTTANDLLRFIGTSDVALLIAVLVSFWTFGAKRGFNREQ HHHHHHHHHHHCCHHHEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH IQKFCGDCLAPIAGITLIVGAGGGFGRVLMDSGISKEIVATATAAHLSPLLFGWFVAALI HHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RLATGSATVAMTTACGIVAPVAAASGVQVKPELLVLATGSGSLIFSHVNDGGFWLIKEYF HHHCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCCEEEEEECCCCEEEEHHHH GMTVGQTFQTWSLCETIISLMGLGLTFALAAVL CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: gluconate [Periplasm]; Proton [Periplasm]; L-idonate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + gluconate [Periplasm] = Proton [Cytoplasm] + gluconate [Cytoplasm] Proton [Periplasm] + L-idonate [Periplasm] = L-idonate [Cytoplasm] + Proton [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA