| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is katA [H]
Identifier: 186477269
GI number: 186477269
Start: 2839437
End: 2840891
Strand: Reverse
Name: katA [H]
Synonym: Bphy_2521
Alternate gene names: 186477269
Gene position: 2840891-2839437 (Counterclockwise)
Preceding gene: 186477270
Following gene: 186477268
Centisome position: 81.65
GC content: 61.24
Gene sequence:
>1455_bases ATGTCTGAACGCACCCTCACCACCGCTTCGGGCGCACCCGTCGCCGACAACCAGAATTCGCTGACGGCCGGCCCGCGCGG CCCCGTCGCGCTGCAGGACGTGTGGCTGATCGAAAAACTCGCTCACTTCGACCGCGAAGTGATTCCCGAGCGTCGCGTTC ACGCGAAGGGTTCGGGCGCGTTCGGCACCCTCAAGGTGACGCATGACATCTCGCGTTACACGAAGGCGAAGGTGTTCTCG GAAGTGGGCAAGGAAACGCCGCTGTTCATGCGCTTCTCGACAGTGGCGGGTGAGCGCGGCGCGGCCGACGCCGAGCGCGA CGTGCGCGGCTTCTCGATCAAGTTCTACACCGAAGAGGGCAACTGGGACGTCGTGGGCAATAACACGCCTGTGTTCTTCA TCCGCGATCCGCTGAAGTTTCCCGACTTCATCCACACGCAAAAGCGTGATCCGTACACCAATATGCGCAGCGCGACGAAT GCGTGGGATTTCTTCTCGCGTCACCCTGAGTCGCTGCATCAGGTGACGATCGTGATGAGCGATCGCGGCATTCCGAAGAA CTACCGGCAGATGCATGGCTTCGGCTCGCACACGTTCTCGTTCATTAACGCGAATGACGAGCGCTTCTGGGTGAAGTTCC ATTTCAAGTCGATGCAGGGTATCGAGAATTACACCGATGAAGAGGCCGCGCAAGTCGTCGCGCGTGACCGTGAAAGTGCG CAGCGCGACCTCGTCGAGTCGATCGACGGCGGCCAGTTTCCGAAGTGGCACTTCCAGATTCAGGTGATGCCGGAACAGGA TGCAGCGGTGTATCGCTACAACCCGTTCGATATCACGAAGGTCTGGCCGTACAAGGACTATCCGCTGATCGATGTCGGCG TGATCGAGTTGAATCGCAATGCGCAGAATTACTTCGCGGATGTCGAGCAGGCCGCATTTACGCCGGCAAACGTAGTGCCC GGCATTGGCTTCTCGCCGGACCGCCTGCTGCAAGGGCGCCTGTTCTCGTACGGTGACACGCAGCGCTATCGTCTCGGCGT GAATCATCATCTGATTCCCGTGAACGCGTCGCGCGCATCGAACGTGCGCTCGTTCCATCGCGACGGCGGCATGCGCGTCG ACGGCAATCTTGGCGGCAGCGTGAACTACGAGCCGAACCGTTTCGGCGACTTCGCGCAGGACCGTAACGCGATCGAGCCG CCGCTCGCGGCAGGCAACGTCGGTCACTACAACCATCGCGAAGACGACGATTACTACAGCCAGCCGGCGGCGCTGTTCCG CATTTTCGACAGCGCACAGCGCGAACGTCTGTTCGGCAACATCGCGCGAGCGATCGACGGCGTGCCCGCCGATATCGTCG CGCGACAGATCGAGCACTTCCGCAAGATCGATCCGGCGTATGCCGACGGCGTGATCGCTGCCATCGAGGCGCTCGCGAAA GCGAAGGCGAAGTAG
Upstream 100 bases:
>100_bases TACTCGTCGATCGCGCGCTGTCCGCCTGATCGCGCTCCCGCTGTTCACCGAATCCATCGCACGCTACGACGGCAACTCAA GCATCATCCGGAGAAGAACT
Downstream 100 bases:
>100_bases CATTTCGGCTTGCAGACGGCGCATGCGCCGTCTGCTCCGGCAAGCAACGAGTACAGGACGACGCGATGCCCTCCTGTCGG CAAAGGAGAAAGATCATGGT
Product: catalase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MSERTLTTASGAPVADNQNSLTAGPRGPVALQDVWLIEKLAHFDREVIPERRVHAKGSGAFGTLKVTHDISRYTKAKVFS EVGKETPLFMRFSTVAGERGAADAERDVRGFSIKFYTEEGNWDVVGNNTPVFFIRDPLKFPDFIHTQKRDPYTNMRSATN AWDFFSRHPESLHQVTIVMSDRGIPKNYRQMHGFGSHTFSFINANDERFWVKFHFKSMQGIENYTDEEAAQVVARDRESA QRDLVESIDGGQFPKWHFQIQVMPEQDAAVYRYNPFDITKVWPYKDYPLIDVGVIELNRNAQNYFADVEQAAFTPANVVP GIGFSPDRLLQGRLFSYGDTQRYRLGVNHHLIPVNASRASNVRSFHRDGGMRVDGNLGGSVNYEPNRFGDFAQDRNAIEP PLAAGNVGHYNHREDDDYYSQPAALFRIFDSAQRERLFGNIARAIDGVPADIVARQIEHFRKIDPAYADGVIAAIEALAK AKAK
Sequences:
>Translated_484_residues MSERTLTTASGAPVADNQNSLTAGPRGPVALQDVWLIEKLAHFDREVIPERRVHAKGSGAFGTLKVTHDISRYTKAKVFS EVGKETPLFMRFSTVAGERGAADAERDVRGFSIKFYTEEGNWDVVGNNTPVFFIRDPLKFPDFIHTQKRDPYTNMRSATN AWDFFSRHPESLHQVTIVMSDRGIPKNYRQMHGFGSHTFSFINANDERFWVKFHFKSMQGIENYTDEEAAQVVARDRESA QRDLVESIDGGQFPKWHFQIQVMPEQDAAVYRYNPFDITKVWPYKDYPLIDVGVIELNRNAQNYFADVEQAAFTPANVVP GIGFSPDRLLQGRLFSYGDTQRYRLGVNHHLIPVNASRASNVRSFHRDGGMRVDGNLGGSVNYEPNRFGDFAQDRNAIEP PLAAGNVGHYNHREDDDYYSQPAALFRIFDSAQRERLFGNIARAIDGVPADIVARQIEHFRKIDPAYADGVIAAIEALAK AKAK >Mature_483_residues SERTLTTASGAPVADNQNSLTAGPRGPVALQDVWLIEKLAHFDREVIPERRVHAKGSGAFGTLKVTHDISRYTKAKVFSE VGKETPLFMRFSTVAGERGAADAERDVRGFSIKFYTEEGNWDVVGNNTPVFFIRDPLKFPDFIHTQKRDPYTNMRSATNA WDFFSRHPESLHQVTIVMSDRGIPKNYRQMHGFGSHTFSFINANDERFWVKFHFKSMQGIENYTDEEAAQVVARDRESAQ RDLVESIDGGQFPKWHFQIQVMPEQDAAVYRYNPFDITKVWPYKDYPLIDVGVIELNRNAQNYFADVEQAAFTPANVVPG IGFSPDRLLQGRLFSYGDTQRYRLGVNHHLIPVNASRASNVRSFHRDGGMRVDGNLGGSVNYEPNRFGDFAQDRNAIEPP LAAGNVGHYNHREDDDYYSQPAALFRIFDSAQRERLFGNIARAIDGVPADIVARQIEHFRKIDPAYADGVIAAIEALAKA KAK
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=481, Percent_Identity=50.9355509355509, Blast_Score=504, Evalue=1e-143, Organism=Escherichia coli, GI48994891, Length=390, Percent_Identity=48.4615384615385, Blast_Score=355, Evalue=3e-99, Organism=Caenorhabditis elegans, GI71998444, Length=481, Percent_Identity=49.8960498960499, Blast_Score=485, Evalue=1e-137, Organism=Caenorhabditis elegans, GI25147792, Length=470, Percent_Identity=48.7234042553191, Blast_Score=465, Evalue=1e-131, Organism=Caenorhabditis elegans, GI25151141, Length=468, Percent_Identity=48.9316239316239, Blast_Score=465, Evalue=1e-131, Organism=Saccharomyces cerevisiae, GI6320462, Length=492, Percent_Identity=45.1219512195122, Blast_Score=392, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6321525, Length=404, Percent_Identity=40.5940594059406, Blast_Score=310, Evalue=2e-85, Organism=Drosophila melanogaster, GI17981717, Length=487, Percent_Identity=48.0492813141684, Blast_Score=466, Evalue=1e-131, Organism=Drosophila melanogaster, GI19920968, Length=485, Percent_Identity=44.7422680412371, Blast_Score=437, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 54700; Mature: 54568
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00437 CATALASE_1 ; PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERTLTTASGAPVADNQNSLTAGPRGPVALQDVWLIEKLAHFDREVIPERRVHAKGSGA CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC FGTLKVTHDISRYTKAKVFSEVGKETPLFMRFSTVAGERGAADAERDVRGFSIKFYTEEG EEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCHHCCCEEEEEEEEECC NWDVVGNNTPVFFIRDPLKFPDFIHTQKRDPYTNMRSATNAWDFFSRHPESLHQVTIVMS CEEEECCCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCCEEEEEEEE DRGIPKNYRQMHGFGSHTFSFINANDERFWVKFHFKSMQGIENYTDEEAAQVVARDRESA CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEEEECHHCCHHCCCHHHHHHHHHHHHHHH QRDLVESIDGGQFPKWHFQIQVMPEQDAAVYRYNPFDITKVWPYKDYPLIDVGVIELNRN HHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCC AQNYFADVEQAAFTPANVVPGIGFSPDRLLQGRLFSYGDTQRYRLGVNHHLIPVNASRAS HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHCCCCCCEEEECCCEEEEEECCCHHH NVRSFHRDGGMRVDGNLGGSVNYEPNRFGDFAQDRNAIEPPLAAGNVGHYNHREDDDYYS HHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH QPAALFRIFDSAQRERLFGNIARAIDGVPADIVARQIEHFRKIDPAYADGVIAAIEALAK CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AKAK HCCC >Mature Secondary Structure SERTLTTASGAPVADNQNSLTAGPRGPVALQDVWLIEKLAHFDREVIPERRVHAKGSGA CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC FGTLKVTHDISRYTKAKVFSEVGKETPLFMRFSTVAGERGAADAERDVRGFSIKFYTEEG EEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCHHCCCEEEEEEEEECC NWDVVGNNTPVFFIRDPLKFPDFIHTQKRDPYTNMRSATNAWDFFSRHPESLHQVTIVMS CEEEECCCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCCEEEEEEEE DRGIPKNYRQMHGFGSHTFSFINANDERFWVKFHFKSMQGIENYTDEEAAQVVARDRESA CCCCCHHHHHHCCCCCCEEEEEECCCCEEEEEEEECHHCCHHCCCHHHHHHHHHHHHHHH QRDLVESIDGGQFPKWHFQIQVMPEQDAAVYRYNPFDITKVWPYKDYPLIDVGVIELNRN HHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCC AQNYFADVEQAAFTPANVVPGIGFSPDRLLQGRLFSYGDTQRYRLGVNHHLIPVNASRAS HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHCCCCCCEEEECCCEEEEEECCCHHH NVRSFHRDGGMRVDGNLGGSVNYEPNRFGDFAQDRNAIEPPLAAGNVGHYNHREDDDYYS HHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH QPAALFRIFDSAQRERLFGNIARAIDGVPADIVARQIEHFRKIDPAYADGVIAAIEALAK CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AKAK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]