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The map label for this gene is rhaS [C]

Identifier: 186477225

GI number: 186477225

Start: 2782253

End: 2783254

Strand: Reverse

Name: rhaS [C]

Synonym: Bphy_2476

Alternate gene names: 186477225

Gene position: 2783254-2782253 (Counterclockwise)

Preceding gene: 186477228

Following gene: 186477224

Centisome position: 80.0

GC content: 62.28

Gene sequence:

>1002_bases
ATGGCGTATGCAAGTCTTGAATCTCCGATGGTGGGTTGGGTGCGCGCGCCGGAGCGCAGCGCGCACTACGCAGCCGCCAC
TCGGCACATTGCAATCTTGCTATTCGACGGATGTTCGCTGCTTGGCGCGGGCATCGTCGCTGAGGTTTTTCATGCCGCTA
ACGAACTGTCTTCATCCGCCAGTCATAACTGGATCTACGACGTGAGCTTCCTCTCGGCTGCTGGCGGCAACATCACGTGC
TCGTCGTCGATCCGCGTGTGGACGGATGGGCTCGATGCGCGTCATTACATGGGTTTCGATGCGCTATTCGTCGCGGGTGG
CAAAGGCGCGCATTCAGCGGCCCGCGACGAACGTCTCATCGCCTGGCTGCGACGTGTGCATGCGAACACGAGCACCGTGC
GTCCTATCGGCGAAGGACGCTCGCTGCTTGAAGCGGCATGCATCAACGGTGTCCAGCAGCGCGACTTTGGCAGCTACTCC
GTGCGGGAAGAACGCGAAGAACGTAATGGCAGCGAAGCGAACGACCGCCTCGAATCGATGAAGAGCGCGCTGATGCTGAT
CAAGCGCGATCTCGGCATCGACGTCGCGCGCAACGTGGCCGAACGCCTGATGCCCGACGCCGGCGACAGCCTGATGTCGC
TGCTCGGTGACAGCACGGGCAAGAGTCCCGCGGACAAGGTGCGCGCCGCTGCGCGCTGGTTACAGGAGAACTGCCAGCGG
TCGATCTCGATCGCGGATGCGGCCCAGGTGGCCGCAATGAGCGAACGCAATTTCCTGCGCCGCTTCAAGATGGAAGTGGG
CGTCACTCCGTCGGATTACCTGCTGCACGCACGGCTCGCGATTACCTGCAGCCTGTTGACCGATTCCGAACTGCCCGTCG
ACAAGATCGCGCGGCGCACGGGAATGGGCAACGGCGATCGGCTCGCCAAGATCTTCCGCAAGCGGATGAAAGTCTCGCCG
ACGGAATATCGGATGAAAACCCGGCGCGAAGCCGGCATCTAG

Upstream 100 bases:

>100_bases
AGTCGGGGCCGGGATTGTTTTTTTAATGCGTATGATGCACTGCACATCGCATGCATTTATCTAGTTCTTTCCACGCCGGA
ATGGTCAAGGGGGAAGAGTC

Downstream 100 bases:

>100_bases
CCGACCTTCCCGATCCCGCAGTGGGTGCCGGGCTTTCGTGCCAGGCGTCCAGTGGCATACATTAAGGAGTGCGTACATGC
TGACGGACCAGAACAATCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Activator FtrA; ADPA Family Transcriptional Regulator; ThiJ/PfpI Domain-Containing Protein; AraC Family Regulatory Protein; Transcriptional Regulator DarR; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator Protein; ADPA-Family Transcriptional Regulator; Transcriptional Regulator Arac Family; AraC Family Regulatory Helix-Turn-Helix Protein; DJ-1/PfpI Family; Helix-Turn-Helix AraC Type; Transcriptional Regulator Protein AraC Family; GATase1_AraC_1 Family Transcriptional Regulator; Transcriptional Regulator Protein; AraC-Family Protein Transcriptional Regulator; AraC Family Regulatory Helix-Turn-Helix

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MAYASLESPMVGWVRAPERSAHYAAATRHIAILLFDGCSLLGAGIVAEVFHAANELSSSASHNWIYDVSFLSAAGGNITC
SSSIRVWTDGLDARHYMGFDALFVAGGKGAHSAARDERLIAWLRRVHANTSTVRPIGEGRSLLEAACINGVQQRDFGSYS
VREEREERNGSEANDRLESMKSALMLIKRDLGIDVARNVAERLMPDAGDSLMSLLGDSTGKSPADKVRAAARWLQENCQR
SISIADAAQVAAMSERNFLRRFKMEVGVTPSDYLLHARLAITCSLLTDSELPVDKIARRTGMGNGDRLAKIFRKRMKVSP
TEYRMKTRREAGI

Sequences:

>Translated_333_residues
MAYASLESPMVGWVRAPERSAHYAAATRHIAILLFDGCSLLGAGIVAEVFHAANELSSSASHNWIYDVSFLSAAGGNITC
SSSIRVWTDGLDARHYMGFDALFVAGGKGAHSAARDERLIAWLRRVHANTSTVRPIGEGRSLLEAACINGVQQRDFGSYS
VREEREERNGSEANDRLESMKSALMLIKRDLGIDVARNVAERLMPDAGDSLMSLLGDSTGKSPADKVRAAARWLQENCQR
SISIADAAQVAAMSERNFLRRFKMEVGVTPSDYLLHARLAITCSLLTDSELPVDKIARRTGMGNGDRLAKIFRKRMKVSP
TEYRMKTRREAGI
>Mature_332_residues
AYASLESPMVGWVRAPERSAHYAAATRHIAILLFDGCSLLGAGIVAEVFHAANELSSSASHNWIYDVSFLSAAGGNITCS
SSIRVWTDGLDARHYMGFDALFVAGGKGAHSAARDERLIAWLRRVHANTSTVRPIGEGRSLLEAACINGVQQRDFGSYSV
REEREERNGSEANDRLESMKSALMLIKRDLGIDVARNVAERLMPDAGDSLMSLLGDSTGKSPADKVRAAARWLQENCQRS
ISIADAAQVAAMSERNFLRRFKMEVGVTPSDYLLHARLAITCSLLTDSELPVDKIARRTGMGNGDRLAKIFRKRMKVSPT
EYRMKTRREAGI

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36521; Mature: 36390

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYASLESPMVGWVRAPERSAHYAAATRHIAILLFDGCSLLGAGIVAEVFHAANELSSSA
CCCCCCCCCCHHHEECCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
SHNWIYDVSFLSAAGGNITCSSSIRVWTDGLDARHYMGFDALFVAGGKGAHSAARDERLI
CCCEEEEEHHHHCCCCCEEECCCCEEEECCCCHHHHCCCCEEEEECCCCCCHHHHHHHHH
AWLRRVHANTSTVRPIGEGRSLLEAACINGVQQRDFGSYSVREEREERNGSEANDRLESM
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHH
KSALMLIKRDLGIDVARNVAERLMPDAGDSLMSLLGDSTGKSPADKVRAAARWLQENCQR
HHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SISIADAAQVAAMSERNFLRRFKMEVGVTPSDYLLHARLAITCSLLTDSELPVDKIARRT
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEHHCCCCCCHHHHHHHH
GMGNGDRLAKIFRKRMKVSPTEYRMKTRREAGI
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AYASLESPMVGWVRAPERSAHYAAATRHIAILLFDGCSLLGAGIVAEVFHAANELSSSA
CCCCCCCCCHHHEECCCCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC
SHNWIYDVSFLSAAGGNITCSSSIRVWTDGLDARHYMGFDALFVAGGKGAHSAARDERLI
CCCEEEEEHHHHCCCCCEEECCCCEEEECCCCHHHHCCCCEEEEECCCCCCHHHHHHHHH
AWLRRVHANTSTVRPIGEGRSLLEAACINGVQQRDFGSYSVREEREERNGSEANDRLESM
HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHH
KSALMLIKRDLGIDVARNVAERLMPDAGDSLMSLLGDSTGKSPADKVRAAARWLQENCQR
HHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
SISIADAAQVAAMSERNFLRRFKMEVGVTPSDYLLHARLAITCSLLTDSELPVDKIARRT
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEHHCCCCCCHHHHHHHH
GMGNGDRLAKIFRKRMKVSPTEYRMKTRREAGI
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA