| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is xanB [H]
Identifier: 186477224
GI number: 186477224
Start: 2780659
End: 2782176
Strand: Reverse
Name: xanB [H]
Synonym: Bphy_2475
Alternate gene names: 186477224
Gene position: 2782176-2780659 (Counterclockwise)
Preceding gene: 186477225
Following gene: 186477223
Centisome position: 79.97
GC content: 66.93
Gene sequence:
>1518_bases ATGCTGACGGACCAGAACAATCCGACGAGTGCGGCAGAACCGGCAAACGCGTTGCCCCCCTGCACGCATATCGTGCCTGT GATTCTGGCAGGCGGATCGGGCACGCGGCTGTGGCCGATGTCGCGCGAAAACTTTCCGAAACAGCTGATCGGCGTAGTCG GTTCGGAGTCGCTGCTGCAGGACACCGTGCATCGGATGGAAGGCTTCCCGGCCGGATGGGACGTGTCGCAGGCGCCCATC GTCGTGTGCGGCGAAGAACATCGTTTCGTGATTGCCGAGCAACTCACGCACAACGGCTGCACGCCGCGCCTCGTCGTCGA GCCGGCACGGCGCGACACGGCGCCCGCGCTGACGCTGGCAGCCGCGCTCGCATGCGCGAACGGCGACGACGCGATTCTCG TCGTGATGCCGTCCGATCACGCAATCGCCGATGTGCCCGCGTTGCAGCGCGCGCTCGAGGTCGCCGCGCGCCACGCGCAA CGCGGTTCGATCGCCACGCTCGGCGTGCCGCCGCGGGCGCCGGAAACGGGCTTCGGTTATATCCGCGTCGGCAGAAAGCT CGACGACGAGGCGCGCGAGATCGACGGTTTCGTCGAAAAGCCCGCAGCCGAACTCGCGAAGCAGTATCTCGCACAAGGCA CCTACTGGTGGAACAGCGGCATCTTCATCGTGCGCGCAAGCGTATGGCTCGCGACGCTGCAGTCGCTGCAGCCCGACATG CACGCGGCGTGTCTAGCAGCGTTCGTGCAAGGGCAATCGGACGGCGCCACGTTGCGTCCCGCAGCCGACGCGTTCACGCG CTCGCCCGCCGATTCGATCGACTACGCGGTGATGGAGCGCCTCAATGCATCGGCAGGCTGGACCTCGGCGGGTGTGGTCG TGCCGCTCGACGCGGGCTGGTCCGACCTCGGCTCGTGGGATGCCGTGTGGGCCGCGCAGCCGAAAGACGAAAACGGCAAC GTCGCGCGCGGCCGCGTGATGTTCGAAGGCGCGGTGTCGAGCTATGCGCATTCGGAAGGGCGCCTCGTCGCGTGTGTCGG CACGACGAACGTCGTCGTCGTCGAAACGGCCGATGCCGTGCTCGTCGCCGACCGCTCGCGCGTGCAGGACGTGAAAGGGC TGGTCGCACGCATCAAGGCGCAGAAGGCGCCCGAGGCCGACGCGCATCGCAAGGTGCGCCGCCCGTGGGGCTTCTACGAC TCGATCGATCAGGGCGACCGCTTCCAGGTAAAGCGCATCGTCGTGACGCCGGGCGCGAAGCTCTCGCTGCAACTGCATCA CCATCGCGCGGAGCACTGGATCGTCGTGCGCGGCACGGCCCTCGTCACGCGCGGCGACGAGCAGTTTCTGCTGAGCGAAA ACGAATCGACCTATATCCCGCTGGGCGTGCGGCATCGGTTGGAGAACCCGGGCAAGGTGCCGCTCGAAATCATCGAAGTG CAGTCGGGCTCGTATCTCGGCGAAGACGACATCGTGCGCTTCGACGACACCTACGGACGCTGCGGGCCGACCAGTTAG
Upstream 100 bases:
>100_bases ACCCGGCGCGAAGCCGGCATCTAGCCGACCTTCCCGATCCCGCAGTGGGTGCCGGGCTTTCGTGCCAGGCGTCCAGTGGC ATACATTAAGGAGTGCGTAC
Downstream 100 bases:
>100_bases GACGCGCGGCGGCGAAAGACGCCACACCCGTAGAGCAGGTAACGAACGACGAATGGCAGGGTGAACGACATGCGGGATTT ACAGGACTTTTTCGCGCGGG
Product: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Products: NA
Alternate protein names: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; Mannose-1-phosphate guanylyl transferase; GDP-mannose pyrophosphorylase; GMP; GMPP [H]
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MLTDQNNPTSAAEPANALPPCTHIVPVILAGGSGTRLWPMSRENFPKQLIGVVGSESLLQDTVHRMEGFPAGWDVSQAPI VVCGEEHRFVIAEQLTHNGCTPRLVVEPARRDTAPALTLAAALACANGDDAILVVMPSDHAIADVPALQRALEVAARHAQ RGSIATLGVPPRAPETGFGYIRVGRKLDDEAREIDGFVEKPAAELAKQYLAQGTYWWNSGIFIVRASVWLATLQSLQPDM HAACLAAFVQGQSDGATLRPAADAFTRSPADSIDYAVMERLNASAGWTSAGVVVPLDAGWSDLGSWDAVWAAQPKDENGN VARGRVMFEGAVSSYAHSEGRLVACVGTTNVVVVETADAVLVADRSRVQDVKGLVARIKAQKAPEADAHRKVRRPWGFYD SIDQGDRFQVKRIVVTPGAKLSLQLHHHRAEHWIVVRGTALVTRGDEQFLLSENESTYIPLGVRHRLENPGKVPLEIIEV QSGSYLGEDDIVRFDDTYGRCGPTS
Sequences:
>Translated_505_residues MLTDQNNPTSAAEPANALPPCTHIVPVILAGGSGTRLWPMSRENFPKQLIGVVGSESLLQDTVHRMEGFPAGWDVSQAPI VVCGEEHRFVIAEQLTHNGCTPRLVVEPARRDTAPALTLAAALACANGDDAILVVMPSDHAIADVPALQRALEVAARHAQ RGSIATLGVPPRAPETGFGYIRVGRKLDDEAREIDGFVEKPAAELAKQYLAQGTYWWNSGIFIVRASVWLATLQSLQPDM HAACLAAFVQGQSDGATLRPAADAFTRSPADSIDYAVMERLNASAGWTSAGVVVPLDAGWSDLGSWDAVWAAQPKDENGN VARGRVMFEGAVSSYAHSEGRLVACVGTTNVVVVETADAVLVADRSRVQDVKGLVARIKAQKAPEADAHRKVRRPWGFYD SIDQGDRFQVKRIVVTPGAKLSLQLHHHRAEHWIVVRGTALVTRGDEQFLLSENESTYIPLGVRHRLENPGKVPLEIIEV QSGSYLGEDDIVRFDDTYGRCGPTS >Mature_505_residues MLTDQNNPTSAAEPANALPPCTHIVPVILAGGSGTRLWPMSRENFPKQLIGVVGSESLLQDTVHRMEGFPAGWDVSQAPI VVCGEEHRFVIAEQLTHNGCTPRLVVEPARRDTAPALTLAAALACANGDDAILVVMPSDHAIADVPALQRALEVAARHAQ RGSIATLGVPPRAPETGFGYIRVGRKLDDEAREIDGFVEKPAAELAKQYLAQGTYWWNSGIFIVRASVWLATLQSLQPDM HAACLAAFVQGQSDGATLRPAADAFTRSPADSIDYAVMERLNASAGWTSAGVVVPLDAGWSDLGSWDAVWAAQPKDENGN VARGRVMFEGAVSSYAHSEGRLVACVGTTNVVVVETADAVLVADRSRVQDVKGLVARIKAQKAPEADAHRKVRRPWGFYD SIDQGDRFQVKRIVVTPGAKLSLQLHHHRAEHWIVVRGTALVTRGDEQFLLSENESTYIPLGVRHRLENPGKVPLEIIEV QSGSYLGEDDIVRFDDTYGRCGPTS
Specific function: Involved in xanthan production [H]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788362, Length=486, Percent_Identity=49.1769547325103, Blast_Score=449, Evalue=1e-127,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 [H]
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase [H]
EC number: =5.3.1.8; =2.7.7.13 [H]
Molecular weight: Translated: 54526; Mature: 54526
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDQNNPTSAAEPANALPPCTHIVPVILAGGSGTRLWPMSRENFPKQLIGVVGSESLLQ CCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCHHHHHHHCCHHHHH DTVHRMEGFPAGWDVSQAPIVVCGEEHRFVIAEQLTHNGCTPRLVVEPARRDTAPALTLA HHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEHHHCCCCCCEEEECCCCCCCCHHHHHH AALACANGDDAILVVMPSDHAIADVPALQRALEVAARHAQRGSIATLGVPPRAPETGFGY HHHHCCCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE IRVGRKLDDEAREIDGFVEKPAAELAKQYLAQGTYWWNSGIFIVRASVWLATLQSLQPDM EEECCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHHCCHH HAACLAAFVQGQSDGATLRPAADAFTRSPADSIDYAVMERLNASAGWTSAGVVVPLDAGW HHHHHHHHHCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCC SDLGSWDAVWAAQPKDENGNVARGRVMFEGAVSSYAHSEGRLVACVGTTNVVVVETADAV CCCCCCCEEEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEECCCCEEEEEECCEE LVADRSRVQDVKGLVARIKAQKAPEADAHRKVRRPWGFYDSIDQGDRFQVKRIVVTPGAK EEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCE LSLQLHHHRAEHWIVVRGTALVTRGDEQFLLSENESTYIPLGVRHRLENPGKVPLEIIEV EEEEEEECCCCEEEEEECEEEEECCCCEEEEECCCCEEEEEHHHHHCCCCCCCCEEEEEE QSGSYLGEDDIVRFDDTYGRCGPTS CCCCCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MLTDQNNPTSAAEPANALPPCTHIVPVILAGGSGTRLWPMSRENFPKQLIGVVGSESLLQ CCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCEEECCCCCCCCHHHHHHHCCHHHHH DTVHRMEGFPAGWDVSQAPIVVCGEEHRFVIAEQLTHNGCTPRLVVEPARRDTAPALTLA HHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEHHHCCCCCCEEEECCCCCCCCHHHHHH AALACANGDDAILVVMPSDHAIADVPALQRALEVAARHAQRGSIATLGVPPRAPETGFGY HHHHCCCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEE IRVGRKLDDEAREIDGFVEKPAAELAKQYLAQGTYWWNSGIFIVRASVWLATLQSLQPDM EEECCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHHCCHH HAACLAAFVQGQSDGATLRPAADAFTRSPADSIDYAVMERLNASAGWTSAGVVVPLDAGW HHHHHHHHHCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCC SDLGSWDAVWAAQPKDENGNVARGRVMFEGAVSSYAHSEGRLVACVGTTNVVVVETADAV CCCCCCCEEEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEECCCCEEEEEECCEE LVADRSRVQDVKGLVARIKAQKAPEADAHRKVRRPWGFYDSIDQGDRFQVKRIVVTPGAK EEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCE LSLQLHHHRAEHWIVVRGTALVTRGDEQFLLSENESTYIPLGVRHRLENPGKVPLEIIEV EEEEEEECCCCEEEEEECEEEEECCCCEEEEECCCCEEEEEHHHHHCCCCCCCCEEEEEE QSGSYLGEDDIVRFDDTYGRCGPTS CCCCCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280; 11589581 [H]