Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 186477177

GI number: 186477177

Start: 2730101

End: 2731090

Strand: Direct

Name: ycaN [H]

Synonym: Bphy_2428

Alternate gene names: 186477177

Gene position: 2730101-2731090 (Clockwise)

Preceding gene: 186477174

Following gene: 186477178

Centisome position: 78.47

GC content: 66.06

Gene sequence:

>990_bases
ATGAATCAGGTTTATGCAATGCGGGTGTTTGTCCGGGTCGCCGAAACACAGAGCTTCAGACGCGCGGCCCAGCAACTGAA
GGTATCGAACGCGCTGGTCACCCGCTCGATCGCCACACTCGAGGCGCATCTGCACGCGCGCCTCATCAACCGCACGACGC
GCAACCTTTCGCTGACGGAAGCCGGCACGCATTATCTGGAAGGCTGCCGTGGGTTGCTGGAGGAACTCGACCATCTGGAG
GGTTCGGTCGCTGGCACCGAGCGCGAGCCGGGCGGCACGTTGCGCGTCGTCGCAACCGGCTCGCTGTCGCCGCAGGCGCT
AACGCATCTGTTGGACGGCTACCGGCGCCATTATCCAAAGGTGCGCATCCGGCTCACGCTCGCCGAGCGCATGCCGCACC
TGCTCGAAGACGGCTACGACGTCGGGCTCTTCATTGCGAGTCCGGCCCCGGCGCCGGGTGCGGCGGCCGAGATCGACAGC
ATCGAGCTGTCGTTCGCCACGCAGCGGCTCGTCGCATGCGCCGCGCCTTCCTATCTCGCAGCGCACGAGGAGCCTCGCCG
CCCTGAGCAGATGGCGCTGCATTCGTGTATCGCGACGCCCTCCGAGCAGCGCGGCCCGACAGTCTGGCATTTCATCGACA
GCGACGGCGATGCGCAACCTGTCACGCTCGAGCCGTCGTACACGGTCAACAGTCCACTGCTCGTGCGACTCGCGGCGATC
GCAGGCATGGGCATCGCCGTGCTGCCCGAGTCGCTGGTCGCCGACGACTTCGCAACGGGCGCGTTGAAGCGCATCATGCA
GGGCTATACCGTCGATGAATCGCAGGCCAAGGTGTCGCTCGTCTATCCGCGCCGCCGTCATTTGCCGGCCAAAACCCGCG
CGTTCGTCGACTACACGGTCGGCCATGCGGGTTGTCCCGCAGACGTCCTGCCCATCGCGACGCATGCGATCGTGGCGCAC
GACATGCGTCTCGCGCAGCACGCTTCGTGA

Upstream 100 bases:

>100_bases
GCCCGTATTACACCCGCCAACGGTCGACGCAGACGTGTCTGCCGCACGCCACCACCGGGTCAACGATGCGCGACAGCATC
GCGCTTTAGAGGGCGCCACC

Downstream 100 bases:

>100_bases
GGCGTGCGCCGTGGGCCACGCGTCGCGGACGCCGCACGGGAAGCTCATCAGGAGAGCCGTGACATGCGCATGATGCTGTT
CAGCAGCCGCCAGTACGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNQVYAMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTEAGTHYLEGCRGLLEELDHLE
GSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPKVRIRLTLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDS
IELSFATQRLVACAAPSYLAAHEEPRRPEQMALHSCIATPSEQRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAI
AGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDYTVGHAGCPADVLPIATHAIVAH
DMRLAQHAS

Sequences:

>Translated_329_residues
MNQVYAMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTEAGTHYLEGCRGLLEELDHLE
GSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPKVRIRLTLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDS
IELSFATQRLVACAAPSYLAAHEEPRRPEQMALHSCIATPSEQRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAI
AGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDYTVGHAGCPADVLPIATHAIVAH
DMRLAQHAS
>Mature_329_residues
MNQVYAMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTEAGTHYLEGCRGLLEELDHLE
GSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPKVRIRLTLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDS
IELSFATQRLVACAAPSYLAAHEEPRRPEQMALHSCIATPSEQRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAI
AGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDYTVGHAGCPADVLPIATHAIVAH
DMRLAQHAS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=27.6094276094276, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=27.6094276094276, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=29.5918367346939, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=28.476821192053, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=26.027397260274, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=26.1744966442953, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=23.972602739726, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=25.6809338521401, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=22.5589225589226, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=149, Percent_Identity=32.8859060402685, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786713, Length=258, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=127, Percent_Identity=29.9212598425197, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=23.728813559322, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790011, Length=305, Percent_Identity=22.2950819672131, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=30.8724832214765, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35798; Mature: 35798

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVYAMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
AGTHYLEGCRGLLEELDHLEGSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE
VRIRLTLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDSIELSFATQRLVACAAPSYLA
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHH
AHEEPRRPEQMALHSCIATPSEQRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAI
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHH
AGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDYTV
HCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCHHHHHEEEEEC
GHAGCPADVLPIATHAIVAHDMRLAQHAS
CCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQVYAMRVFVRVAETQSFRRAAQQLKVSNALVTRSIATLEAHLHARLINRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
AGTHYLEGCRGLLEELDHLEGSVAGTEREPGGTLRVVATGSLSPQALTHLLDGYRRHYPK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCE
VRIRLTLAERMPHLLEDGYDVGLFIASPAPAPGAAAEIDSIELSFATQRLVACAAPSYLA
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHCCCHHHH
AHEEPRRPEQMALHSCIATPSEQRGPTVWHFIDSDGDAQPVTLEPSYTVNSPLLVRLAAI
CCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHH
AGMGIAVLPESLVADDFATGALKRIMQGYTVDESQAKVSLVYPRRRHLPAKTRAFVDYTV
HCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCHHHHHEEEEEC
GHAGCPADVLPIATHAIVAHDMRLAQHAS
CCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]