| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477096
Identifier: 186477096
GI number: 186477096
Start: 2632001
End: 2632747
Strand: Direct
Name: 186477096
Synonym: Bphy_2345
Alternate gene names: NA
Gene position: 2632001-2632747 (Clockwise)
Preceding gene: 186477095
Following gene: 186477098
Centisome position: 75.65
GC content: 66.0
Gene sequence:
>747_bases ATGTCGACAACGGTTGAGGTCAGGTGCAACCTGGAGCGACCTTTGAACACACCCGAAACCCTCGCCGTCGACCGCCCCGC GCGCCCCGACAGTACGGACAGGAGCGCCCGCAATGGCGCACCGCCCTCCGGCTCACGTCGAATCACCTTCATCCGCTGGC TGCGCAAGGTGCACAGCTGGATCGGCCTGTGGGGCGCCGCGCTCGGTCTGCTGATGGGCACCAGCGGTTTCCTGCTGAAC CATCGCGGCGGGCCGATGCGCGTATCGACGGGCGAACCGCAAGTCGAATCGCTTCAGGTGAAGCTGCCGCAGCCTGCGCC CGACACGCCGCGCGATCTGGCGAAGTGGCTCAAGCAGGAACTCAAGGTCCAGGGCAAGCCGGGACGCATGCAGAAAGAGC CGTCGCATCCCGTCGCGTGGGGCGATCGCACGGCCGTGCAGCCGGAACACTGGCAGGTTTCATTCGCGACGCCGAACGAA AACACCCAGGCCGAATACTGGGTCGGCAATGACTACGTGAGCGTCAAGCGCAGCTCGAACACGTTGCTCGCGGCGCTGAC GAATCTGCATAAGGGCGTGGGCCTGAGCGTCGGCTGGGTGCTGCTGATCGATACGTTTGCGGGCGGCATGATCCTGCTGT CGCTCACGGGTGTGCTGCTGTGGACGCAGCTGAACAAGCGCCGCACCATCGGCGCGGTGCTGGTGCTCGGGTCCATCGTC GCGGCGATCGTCGCCGGGATGGCCTGA
Upstream 100 bases:
>100_bases CGGCCAGCCAGCCAACGCCATCGCATCCCCCGTCGATGGTCATTCCGTCTCGAAGCATCACGCGCGTCGCAAGCCTTCGC GGCTCGACGCGTGCGCTGCC
Downstream 100 bases:
>100_bases CGGTTCGCGCCCGGCAACACCAGACGCTGGAAAAACCGAAGAGCGATGCGCGATGGCGCGTCGCCCTTTTCGTTGTGCCG CTTGCCGACGCTTATCGGCG
Product: PepSY-associated TM helix domain-containing protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix Domain Protein; PepSY-Associated TM Helix Family Protein; PepSY-Associated TM Helix
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSTTVEVRCNLERPLNTPETLAVDRPARPDSTDRSARNGAPPSGSRRITFIRWLRKVHSWIGLWGAALGLLMGTSGFLLN HRGGPMRVSTGEPQVESLQVKLPQPAPDTPRDLAKWLKQELKVQGKPGRMQKEPSHPVAWGDRTAVQPEHWQVSFATPNE NTQAEYWVGNDYVSVKRSSNTLLAALTNLHKGVGLSVGWVLLIDTFAGGMILLSLTGVLLWTQLNKRRTIGAVLVLGSIV AAIVAGMA
Sequences:
>Translated_248_residues MSTTVEVRCNLERPLNTPETLAVDRPARPDSTDRSARNGAPPSGSRRITFIRWLRKVHSWIGLWGAALGLLMGTSGFLLN HRGGPMRVSTGEPQVESLQVKLPQPAPDTPRDLAKWLKQELKVQGKPGRMQKEPSHPVAWGDRTAVQPEHWQVSFATPNE NTQAEYWVGNDYVSVKRSSNTLLAALTNLHKGVGLSVGWVLLIDTFAGGMILLSLTGVLLWTQLNKRRTIGAVLVLGSIV AAIVAGMA >Mature_247_residues STTVEVRCNLERPLNTPETLAVDRPARPDSTDRSARNGAPPSGSRRITFIRWLRKVHSWIGLWGAALGLLMGTSGFLLNH RGGPMRVSTGEPQVESLQVKLPQPAPDTPRDLAKWLKQELKVQGKPGRMQKEPSHPVAWGDRTAVQPEHWQVSFATPNEN TQAEYWVGNDYVSVKRSSNTLLAALTNLHKGVGLSVGWVLLIDTFAGGMILLSLTGVLLWTQLNKRRTIGAVLVLGSIVA AIVAGMA
Specific function: Unknown
COG id: COG3295
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27079; Mature: 26947
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTVEVRCNLERPLNTPETLAVDRPARPDSTDRSARNGAPPSGSRRITFIRWLRKVHSW CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IGLWGAALGLLMGTSGFLLNHRGGPMRVSTGEPQVESLQVKLPQPAPDTPRDLAKWLKQE HHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH LKVQGKPGRMQKEPSHPVAWGDRTAVQPEHWQVSFATPNENTQAEYWVGNDYVSVKRSSN HEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCC TLLAALTNLHKGVGLSVGWVLLIDTFAGGMILLSLTGVLLWTQLNKRRTIGAVLVLGSIV HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AAIVAGMA HHHHHCCC >Mature Secondary Structure STTVEVRCNLERPLNTPETLAVDRPARPDSTDRSARNGAPPSGSRRITFIRWLRKVHSW CCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH IGLWGAALGLLMGTSGFLLNHRGGPMRVSTGEPQVESLQVKLPQPAPDTPRDLAKWLKQE HHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH LKVQGKPGRMQKEPSHPVAWGDRTAVQPEHWQVSFATPNENTQAEYWVGNDYVSVKRSSN HEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCC TLLAALTNLHKGVGLSVGWVLLIDTFAGGMILLSLTGVLLWTQLNKRRTIGAVLVLGSIV HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AAIVAGMA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA