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The map label for this gene is cobD [H]

Identifier: 186476956

GI number: 186476956

Start: 2479369

End: 2480310

Strand: Direct

Name: cobD [H]

Synonym: Bphy_2205

Alternate gene names: 186476956

Gene position: 2479369-2480310 (Clockwise)

Preceding gene: 186476955

Following gene: 186476957

Centisome position: 71.26

GC content: 69.53

Gene sequence:

>942_bases
ATGATGCTCCTGTCCCTGCCCTTCGTCGCGACACTCGCCACGGCAGCCGTCGCCGTGGACAGATGGCTCGGCGAGCCCGA
GCGCGGGCATCCCCTCGTCGCTTTCGGCAAGCTGGCCGCGAAGATCGAAGTCGCGCTGAACACCGGGCGGCGCGGCCGGC
TGCTGGGCATCGTCGCGTGGCTGCTCGCCGTCGCGCCGCCCGTTCTGGCCGCGACCTGGCTCGTGCTCGTGCTGCCGTTC
ATGTGGGCGTGTGCCGTGCATGTCGCGCTGCTCTACTTCGCGCTCGGCGCACGCAGTCTGCACGATCACCTCGAGCCGAT
CGGCCGTGCGCTCGCGAAGCGCGATCTTGCCCAGGCGCGCATCTTGACGGCGCGCATCGTGTCGCGTGAGACGTCGCACG
CCGACGAAAGCGCGCTGTCGCGCGCCGCCGTCGAGTCGGCTCTCGAGAACGGCAACGATGCGATCTTCGGCGCGCTGTTC
TGGTTCGCGATTTTCGGCGGCCCGGGCGCGCTAGCCTTTCGTCTTGCGAACACGCTCGATGCGATGTGGGGTTATCGTAC
GCCGCGCTATCTGCGCTTCGGCTGGGCGGCCGCGCGCTTCGACGATGCGCTCAACTACGTGCCCGCCCGCCTGACGGCGC
TCAGCTACGCGCTGCTCGGCGACACACGCACTGCGCTGCAATGCTGGCGCGACCAGGCGCCGCGCTGGGACAGCCCGAAT
GCGGGGCCCGTGATGGCATCCGGCGCGGGCAGCCTCAACGTGCTGCTCGGCGGCGCGGCCGTCTATCACGGCGTGATAGA
ACAGCGTCCGATGCTCGGCGCAGGCCACACGGCGGGTGCACGGCATGTCGAGGCGGCATTGATGCTGGTCGAGCGCAGCG
TGATCCTGTGGCTCGCCGCGTTCATCGTGCTTGCGCTGCTGAGCGTGCCGTTCCAGAGCTGA

Upstream 100 bases:

>100_bases
ATGAACTGGGACGCCTGAACCAGCGCATCGCGGCCATCAGCACGCAGACCACGATGATGGTCGCGGGCCTGCCGCTGCAA
CTCAAACCGGCGAGCCGCGC

Downstream 100 bases:

>100_bases
CCGATGACCCAGATCATTCAGCATGGCGGCAACCTGCACGAAGCGGCACACCGCTACGACATTCCGTATGACGCGTGGCT
CGATCTGTCGACGGGCATCA

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MMLLSLPFVATLATAAVAVDRWLGEPERGHPLVAFGKLAAKIEVALNTGRRGRLLGIVAWLLAVAPPVLAATWLVLVLPF
MWACAVHVALLYFALGARSLHDHLEPIGRALAKRDLAQARILTARIVSRETSHADESALSRAAVESALENGNDAIFGALF
WFAIFGGPGALAFRLANTLDAMWGYRTPRYLRFGWAAARFDDALNYVPARLTALSYALLGDTRTALQCWRDQAPRWDSPN
AGPVMASGAGSLNVLLGGAAVYHGVIEQRPMLGAGHTAGARHVEAALMLVERSVILWLAAFIVLALLSVPFQS

Sequences:

>Translated_313_residues
MMLLSLPFVATLATAAVAVDRWLGEPERGHPLVAFGKLAAKIEVALNTGRRGRLLGIVAWLLAVAPPVLAATWLVLVLPF
MWACAVHVALLYFALGARSLHDHLEPIGRALAKRDLAQARILTARIVSRETSHADESALSRAAVESALENGNDAIFGALF
WFAIFGGPGALAFRLANTLDAMWGYRTPRYLRFGWAAARFDDALNYVPARLTALSYALLGDTRTALQCWRDQAPRWDSPN
AGPVMASGAGSLNVLLGGAAVYHGVIEQRPMLGAGHTAGARHVEAALMLVERSVILWLAAFIVLALLSVPFQS
>Mature_313_residues
MMLLSLPFVATLATAAVAVDRWLGEPERGHPLVAFGKLAAKIEVALNTGRRGRLLGIVAWLLAVAPPVLAATWLVLVLPF
MWACAVHVALLYFALGARSLHDHLEPIGRALAKRDLAQARILTARIVSRETSHADESALSRAAVESALENGNDAIFGALF
WFAIFGGPGALAFRLANTLDAMWGYRTPRYLRFGWAAARFDDALNYVPARLTALSYALLGDTRTALQCWRDQAPRWDSPN
AGPVMASGAGSLNVLLGGAAVYHGVIEQRPMLGAGHTAGARHVEAALMLVERSVILWLAAFIVLALLSVPFQS

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 33634; Mature: 33634

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLLSLPFVATLATAAVAVDRWLGEPERGHPLVAFGKLAAKIEVALNTGRRGRLLGIVAW
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHEEEECCCCCCHHHHHHHH
LLAVAPPVLAATWLVLVLPFMWACAVHVALLYFALGARSLHDHLEPIGRALAKRDLAQAR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTARIVSRETSHADESALSRAAVESALENGNDAIFGALFWFAIFGGPGALAFRLANTLD
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AMWGYRTPRYLRFGWAAARFDDALNYVPARLTALSYALLGDTRTALQCWRDQAPRWDSPN
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
AGPVMASGAGSLNVLLGGAAVYHGVIEQRPMLGAGHTAGARHVEAALMLVERSVILWLAA
CCCEEECCCCCEEHEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FIVLALLSVPFQS
HHHHHHHHCCCCC
>Mature Secondary Structure
MMLLSLPFVATLATAAVAVDRWLGEPERGHPLVAFGKLAAKIEVALNTGRRGRLLGIVAW
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHEEEECCCCCCHHHHHHHH
LLAVAPPVLAATWLVLVLPFMWACAVHVALLYFALGARSLHDHLEPIGRALAKRDLAQAR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTARIVSRETSHADESALSRAAVESALENGNDAIFGALFWFAIFGGPGALAFRLANTLD
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AMWGYRTPRYLRFGWAAARFDDALNYVPARLTALSYALLGDTRTALQCWRDQAPRWDSPN
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
AGPVMASGAGSLNVLLGGAAVYHGVIEQRPMLGAGHTAGARHVEAALMLVERSVILWLAA
CCCEEECCCCCEEHEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FIVLALLSVPFQS
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA