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The map label for this gene is ydfD [H]

Identifier: 186476868

GI number: 186476868

Start: 2372153

End: 2373622

Strand: Reverse

Name: ydfD [H]

Synonym: Bphy_2114

Alternate gene names: 186476868

Gene position: 2373622-2372153 (Counterclockwise)

Preceding gene: 186476875

Following gene: 186476867

Centisome position: 68.22

GC content: 66.8

Gene sequence:

>1470_bases
ATGTCCGTCCCGCTCGACCTGATTCCCGCTCCTCACCACGCCTCGGCGCTCACGCTTGTCGATCAGCTCGTGCAGTGGGC
GCGCCGCCGCATTGAGGAGCGCGTGTTCCGTCCCGGCATGCGCATGCCGTCGATCCGCAAGCTCGCGCTCGACAAGGGCG
TGTCGCGCTTTACGGTCGTCGAGGCGTACGAGCGGCTGGTCGCGCAGGGCTATCTGGATTCGCGGCGCGGCTCGGGCTTT
TACGTGCGCGAGCGGCTGGCGGGCGGTCCGCCGCCCGTCGAGCGCCGTCTCTCGACCCACGAGGCGGCCGATGCCGCACC
CGCGCCCAGCACGATCGACGTCGTCTGGCTGTTGCGCAACATGCTCCACACATCGACGCGGCCCGAGCGCGGGCCCGGCC
TCGGCTATCTGCCGTCGCGCTGGCTGGACGGCGAGCTGATTACGGGCGCGCTGCGCACCCTCGGCCGGCAAAGCGGCGCA
CAGATGCTCGGTTTCGGTACGCCGCAAGGGTTTTTGCCGCTGCGCCAGCAACTGCAGACGCGGCTCGAGGAACTGGAAAT
CGGCGCGTCGCCAGAACAGATCGTGCTCGTGTCGGGCATCACCCAGGCCATCGACCTGATTGCGCGGCTCTATGTGCAGC
CAGGCGACACGGTGATCGTCGGCGATCCGGCGTGGTTCCAGATGTTCGGGCGCTTTGCGTCGCAAGGTGCGCGGCTCGTC
GGCATGCCATACACGCCGGACGGCCCCGATCTCGACGCGCTGGAAACGCTTGTGCAGACGTGGCGGCCGAAAATGCTCGT
GATCAATTCCGTGCTGCAAAACCCGACGGGCACGTCTTTGACGGCGGCGCAGGCGTTTCGCATCCTGCGGCTCGCGGAAG
AATACGATTTCATCGTCGTGGAAGACGATATCTACGGCGACCTTTGCCCGCCGGGCTTTCCCGCGACGCGCCTCGCGAGC
CTCGATCAGCTCAAGCGCGTGATCTATCTGGGCAGCTTCTCGAAGACGCTCGCGGCGAATCTGCGGGTCGGTTTCATCGC
GTCGTCGCCCGACGTGGCGAAGGCCGTCACGGACCAGAAAATGCTGGTCGGCATGACCACGCCCGAGCTGAACGAGCGCG
TGCTCTACAAGATCCTGACGGAAGGGCACTACCGGCGGCACGTCGAGCGGCTGCGCGCGCGGCTCGATACGGTGCGCGAC
AAATCGGTGAGGATGCTCGAAAAAACGGGGCTGCGGATGTTCCAGACGCCGGCGGCGGGCATGTTCGTGTGGGCGGACAC
GGGCGTCGATGCCGATGCGCTCGCGGCGGCCGGCCATGAGGAAGGCTTTTTGCTGACACCGGGAAGCCTGTTCTCGCCGC
AGCAGTCGCCCACCACGTGGATGCGCTTCAATGTCGCGAATTGCGGCGATCCAGCGCTGCCGGCATTCCTGTGCCGCTAT
CTGGACGGCGTTGCCCGGCGGGCTTCATAG

Upstream 100 bases:

>100_bases
TGTCGTCTGATGGACTTCTGTCCGCATCCGGGACACAGCCGGTTACCTTGCCGTGCGCCCGAGCCGACGTCGCCCATGCT
GCACACTGCTGGAGTCCGCC

Downstream 100 bases:

>100_bases
ACCTCTTGAATCCGTGGCGCGCGCCCCCATTTAACAGCGCATCGTCTGTAGCGCGCGCTGTCCGTACAGATGCATTCAGC
CTCGTACCCCGAATCAACCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MSVPLDLIPAPHHASALTLVDQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGYLDSRRGSGF
YVRERLAGGPPPVERRLSTHEAADAAPAPSTIDVVWLLRNMLHTSTRPERGPGLGYLPSRWLDGELITGALRTLGRQSGA
QMLGFGTPQGFLPLRQQLQTRLEELEIGASPEQIVLVSGITQAIDLIARLYVQPGDTVIVGDPAWFQMFGRFASQGARLV
GMPYTPDGPDLDALETLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEEYDFIVVEDDIYGDLCPPGFPATRLAS
LDQLKRVIYLGSFSKTLAANLRVGFIASSPDVAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDTVRD
KSVRMLEKTGLRMFQTPAAGMFVWADTGVDADALAAAGHEEGFLLTPGSLFSPQQSPTTWMRFNVANCGDPALPAFLCRY
LDGVARRAS

Sequences:

>Translated_489_residues
MSVPLDLIPAPHHASALTLVDQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGYLDSRRGSGF
YVRERLAGGPPPVERRLSTHEAADAAPAPSTIDVVWLLRNMLHTSTRPERGPGLGYLPSRWLDGELITGALRTLGRQSGA
QMLGFGTPQGFLPLRQQLQTRLEELEIGASPEQIVLVSGITQAIDLIARLYVQPGDTVIVGDPAWFQMFGRFASQGARLV
GMPYTPDGPDLDALETLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEEYDFIVVEDDIYGDLCPPGFPATRLAS
LDQLKRVIYLGSFSKTLAANLRVGFIASSPDVAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDTVRD
KSVRMLEKTGLRMFQTPAAGMFVWADTGVDADALAAAGHEEGFLLTPGSLFSPQQSPTTWMRFNVANCGDPALPAFLCRY
LDGVARRAS
>Mature_488_residues
SVPLDLIPAPHHASALTLVDQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVVEAYERLVAQGYLDSRRGSGFY
VRERLAGGPPPVERRLSTHEAADAAPAPSTIDVVWLLRNMLHTSTRPERGPGLGYLPSRWLDGELITGALRTLGRQSGAQ
MLGFGTPQGFLPLRQQLQTRLEELEIGASPEQIVLVSGITQAIDLIARLYVQPGDTVIVGDPAWFQMFGRFASQGARLVG
MPYTPDGPDLDALETLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEEYDFIVVEDDIYGDLCPPGFPATRLASL
DQLKRVIYLGSFSKTLAANLRVGFIASSPDVAKAVTDQKMLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDTVRDK
SVRMLEKTGLRMFQTPAAGMFVWADTGVDADALAAAGHEEGFLLTPGSLFSPQQSPTTWMRFNVANCGDPALPAFLCRYL
DGVARRAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=27.0186335403727, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=27.0186335403727, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1787710, Length=454, Percent_Identity=26.431718061674, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=26.0127931769723, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54035; Mature: 53904

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPLDLIPAPHHASALTLVDQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
EAYERLVAQGYLDSRRGSGFYVRERLAGGPPPVERRLSTHEAADAAPAPSTIDVVWLLRN
HHHHHHHHHCCHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLHTSTRPERGPGLGYLPSRWLDGELITGALRTLGRQSGAQMLGFGTPQGFLPLRQQLQT
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
RLEELEIGASPEQIVLVSGITQAIDLIARLYVQPGDTVIVGDPAWFQMFGRFASQGARLV
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEE
GMPYTPDGPDLDALETLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEEYDFIVV
ECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEE
EDDIYGDLCPPGFPATRLASLDQLKRVIYLGSFSKTLAANLRVGFIASSPDVAKAVTDQK
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCHHHHHHCCCH
MLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDTVRDKSVRMLEKTGLRMFQTPAAG
HEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
MFVWADTGVDADALAAAGHEEGFLLTPGSLFSPQQSPTTWMRFNVANCGDPALPAFLCRY
EEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
LDGVARRAS
HHHHHHCCC
>Mature Secondary Structure 
SVPLDLIPAPHHASALTLVDQLVQWARRRIEERVFRPGMRMPSIRKLALDKGVSRFTVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
EAYERLVAQGYLDSRRGSGFYVRERLAGGPPPVERRLSTHEAADAAPAPSTIDVVWLLRN
HHHHHHHHHCCHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
MLHTSTRPERGPGLGYLPSRWLDGELITGALRTLGRQSGAQMLGFGTPQGFLPLRQQLQT
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
RLEELEIGASPEQIVLVSGITQAIDLIARLYVQPGDTVIVGDPAWFQMFGRFASQGARLV
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEE
GMPYTPDGPDLDALETLVQTWRPKMLVINSVLQNPTGTSLTAAQAFRILRLAEEYDFIVV
ECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEE
EDDIYGDLCPPGFPATRLASLDQLKRVIYLGSFSKTLAANLRVGFIASSPDVAKAVTDQK
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCHHHHHHCCCH
MLVGMTTPELNERVLYKILTEGHYRRHVERLRARLDTVRDKSVRMLEKTGLRMFQTPAAG
HEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
MFVWADTGVDADALAAAGHEEGFLLTPGSLFSPQQSPTTWMRFNVANCGDPALPAFLCRY
EEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
LDGVARRAS
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]