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The map label for this gene is psd

Identifier: 186476774

GI number: 186476774

Start: 2271156

End: 2271794

Strand: Reverse

Name: psd

Synonym: Bphy_2019

Alternate gene names: 186476774

Gene position: 2271794-2271156 (Counterclockwise)

Preceding gene: 186476775

Following gene: 186476773

Centisome position: 65.3

GC content: 61.35

Gene sequence:

>639_bases
ATGAATTACCCCCATCCGATCATCGCGCGCGAAGGCTGGCCGTTTATCGCCATCGCGGCCGTCGTTGCGTTGTTGATCCA
CTTCGTCGCAGGGTTCGGCATTGCCTGGATTTTCTGGCTGTTGCTCATCTTCGTGGTGCAGTTCTTCCGCGACCCGGCGC
GTCCAATTCCGACCCAGGCCAACGCGGTGCTGTGCCCGGCCGATGGCCGCATCGTCGCCGTCGAAACGGCGCACGATCCC
TATGCGAACCGCGAAGCGCTGAAGATCAGCGTATTCATGAACGTGTTCAACGTGCACTCGCAGCGCTCGCCCGTGGATGG
TGCGATCTCGAAGGTCGAATATTTTCCGGGCGCGTATCTGAACGCCGCCGTGGACAAGGCGTCGACCGAAAACGAACGTA
ACGCAATCGTCATCGAAACGGCGAGCGGCGCGACGGTGACGTCGGTGCAGATTGCCGGTCTGATCGCGCGACGCATCCTC
TGCTACGTACGCGCGGGCGAGCCGCTGACGCGCGGGCAGCGTTATGGCTTTATCCGTTTCGGATCGCGGGTCGATGTATA
TCTTCCTGTGGGCAGCCGTCCGCGTGTGTCGATCGGCGAAAAGGTGTCGGCGTCGTCCACGATTCTGGCTGAGCTGTAA

Upstream 100 bases:

>100_bases
GCACGAAATGCGCCGGAAGCCTCAAAAAGCCGTCCAGGTGTGCTGAACCCTGGGCGGCTTTTGCTATCCTACGGTTTTTA
AAAAGACTGAACCCAACCTT

Downstream 100 bases:

>100_bases
AGCGGCACAGGGAGGGTTCGATGGCCGCATTCAAACCGCGTCGTCCTCGTAGCAGCGGTGCGCCGCAGCCGCGTCCGTTC
CGGCGCAACAAACCGCCCGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MNYPHPIIAREGWPFIAIAAVVALLIHFVAGFGIAWIFWLLLIFVVQFFRDPARPIPTQANAVLCPADGRIVAVETAHDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAYLNAAVDKASTENERNAIVIETASGATVTSVQIAGLIARRIL
CYVRAGEPLTRGQRYGFIRFGSRVDVYLPVGSRPRVSIGEKVSASSTILAEL

Sequences:

>Translated_212_residues
MNYPHPIIAREGWPFIAIAAVVALLIHFVAGFGIAWIFWLLLIFVVQFFRDPARPIPTQANAVLCPADGRIVAVETAHDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAYLNAAVDKASTENERNAIVIETASGATVTSVQIAGLIARRIL
CYVRAGEPLTRGQRYGFIRFGSRVDVYLPVGSRPRVSIGEKVSASSTILAEL
>Mature_212_residues
MNYPHPIIAREGWPFIAIAAVVALLIHFVAGFGIAWIFWLLLIFVVQFFRDPARPIPTQANAVLCPADGRIVAVETAHDP
YANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAYLNAAVDKASTENERNAIVIETASGATVTSVQIAGLIARRIL
CYVRAGEPLTRGQRYGFIRFGSRVDVYLPVGSRPRVSIGEKVSASSTILAEL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BURP8 (B2JDN8)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001858244.1
- GeneID:   6243508
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_2019
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23169; Mature: 23169

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPHPIIAREGWPFIAIAAVVALLIHFVAGFGIAWIFWLLLIFVVQFFRDPARPIPTQA
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NAVLCPADGRIVAVETAHDPYANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAYL
CEEEECCCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
NAAVDKASTENERNAIVIETASGATVTSVQIAGLIARRILCYVRAGEPLTRGQRYGFIRF
HHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
GSRVDVYLPVGSRPRVSIGEKVSASSTILAEL
CCEEEEEEECCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MNYPHPIIAREGWPFIAIAAVVALLIHFVAGFGIAWIFWLLLIFVVQFFRDPARPIPTQA
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NAVLCPADGRIVAVETAHDPYANREALKISVFMNVFNVHSQRSPVDGAISKVEYFPGAYL
CEEEECCCCEEEEEEECCCCCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
NAAVDKASTENERNAIVIETASGATVTSVQIAGLIARRILCYVRAGEPLTRGQRYGFIRF
HHHHHCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
GSRVDVYLPVGSRPRVSIGEKVSASSTILAEL
CCEEEEEEECCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA