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The map label for this gene is pecT [H]

Identifier: 186476600

GI number: 186476600

Start: 2109202

End: 2110113

Strand: Reverse

Name: pecT [H]

Synonym: Bphy_1845

Alternate gene names: 186476600

Gene position: 2110113-2109202 (Counterclockwise)

Preceding gene: 186476603

Following gene: 186476599

Centisome position: 60.65

GC content: 70.18

Gene sequence:

>912_bases
ATGCTGATGATGCGCGACTTCGACAACAGTCTTCTCCGCGCCTTCGTGACGGTCGCCGAAACGGGCGCCGTCAGTGCGGC
GGCCGTACGCCTCGCCCGCACGCAGGCGGCCGTCAGCATGCAGTTGCGTCGCCTCGAGGACGACATCGGCCAGCGCCTGC
TGGAACGCTCGCCGCGCGGCGTGCGCCTGACGGATGCGGGGCACCGGCTGCTGCCCTATGCACACGCAATCCTCGGCGCA
GGCGAGGACGCGCGGCGCGCGCTCGAAGTCGGTGACGTGGCGGGCACCGTGCGCCTCGGCATGCTCGAGGACGTGGCCGT
CGGCCGTTTGCCGCGCGCGTTGCGGCGCTTCTCGGCCGCGCATCCGCAGGTCGCGCTGGAGATTGTCGTCGATGCCAGTG
CAGCACTGTCTCAACGTCTTGTCGACGGCGGGCTCGACGTGCTGGTCGGCGATCCCGCGATGGTCGACGCGACGCCGCTC
GTCACCTGGACGCAGCCGCTGTTCTGGGTCGGCGCGCGCGGCTGCCTGCTCGATCCCGATACGCCATTGCCACTCGTCGC
ATTCGGCGGCACATGTCTGTGGCAGCAGCAGGTGATGACGATCTTGCGGCGCGCGGGTCTCGCGTGGCGTGTCGTGTGCA
CGAGTACGAGCCTGCCCGCGGTGCAGTCGGCCGTGGAGGCGGGGCTTGGCGTATCGGTGCTGCTCGACGGCAATATCCGG
CACGACACGATGCGCGTGCTCGGCGCGTCCGACGGCTTGCCGGAGCCGCCAGCCGCAGACCTCGGCCTGTTCGTGCGGCA
TGCGGTGAGCACGCAGGAAACAGCCGTCGATGCGTTGCAGCGTTTTCTGTGCGAGGAGCTCGACCTCGGGCTCGGCCTCG
TCGACCGTTCGTCGAGCGCGGCGCGCCGCTAG

Upstream 100 bases:

>100_bases
TCATGTGTGTGGAGCGTGGCGTGCAACGGGCGATGAACGGTCATCATATCGGCGAAAAGCGGCTTAAGATAAGCTGATAT
TTCTTATGCCGATATAACGG

Downstream 100 bases:

>100_bases
CCGAGCGCACACGCCGAGCACACGTGTAGGGGACGCGCCGCCTGTCGATTCGCCCGCAAGGGCGTGATACCCTCGCTTCG
ACGGGATCGCACTGAAGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLMMRDFDNSLLRAFVTVAETGAVSAAAVRLARTQAAVSMQLRRLEDDIGQRLLERSPRGVRLTDAGHRLLPYAHAILGA
GEDARRALEVGDVAGTVRLGMLEDVAVGRLPRALRRFSAAHPQVALEIVVDASAALSQRLVDGGLDVLVGDPAMVDATPL
VTWTQPLFWVGARGCLLDPDTPLPLVAFGGTCLWQQQVMTILRRAGLAWRVVCTSTSLPAVQSAVEAGLGVSVLLDGNIR
HDTMRVLGASDGLPEPPAADLGLFVRHAVSTQETAVDALQRFLCEELDLGLGLVDRSSSAARR

Sequences:

>Translated_303_residues
MLMMRDFDNSLLRAFVTVAETGAVSAAAVRLARTQAAVSMQLRRLEDDIGQRLLERSPRGVRLTDAGHRLLPYAHAILGA
GEDARRALEVGDVAGTVRLGMLEDVAVGRLPRALRRFSAAHPQVALEIVVDASAALSQRLVDGGLDVLVGDPAMVDATPL
VTWTQPLFWVGARGCLLDPDTPLPLVAFGGTCLWQQQVMTILRRAGLAWRVVCTSTSLPAVQSAVEAGLGVSVLLDGNIR
HDTMRVLGASDGLPEPPAADLGLFVRHAVSTQETAVDALQRFLCEELDLGLGLVDRSSSAARR
>Mature_303_residues
MLMMRDFDNSLLRAFVTVAETGAVSAAAVRLARTQAAVSMQLRRLEDDIGQRLLERSPRGVRLTDAGHRLLPYAHAILGA
GEDARRALEVGDVAGTVRLGMLEDVAVGRLPRALRRFSAAHPQVALEIVVDASAALSQRLVDGGLDVLVGDPAMVDATPL
VTWTQPLFWVGARGCLLDPDTPLPLVAFGGTCLWQQQVMTILRRAGLAWRVVCTSTSLPAVQSAVEAGLGVSVLLDGNIR
HDTMRVLGASDGLPEPPAADLGLFVRHAVSTQETAVDALQRFLCEELDLGLGLVDRSSSAARR

Specific function: Regulates pectinase gene expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=35.0393700787402, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=32.8671328671329, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787806, Length=237, Percent_Identity=25.3164556962025, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=27.4900398406374, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=27.6859504132231, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=149, Percent_Identity=30.2013422818792, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=174, Percent_Identity=29.8850574712644, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=122, Percent_Identity=36.0655737704918, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=137, Percent_Identity=34.3065693430657, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=264, Percent_Identity=27.6515151515151, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=25.9259259259259, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32335; Mature: 32335

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMMRDFDNSLLRAFVTVAETGAVSAAAVRLARTQAAVSMQLRRLEDDIGQRLLERSPRG
CCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VRLTDAGHRLLPYAHAILGAGEDARRALEVGDVAGTVRLGMLEDVAVGRLPRALRRFSAA
EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPQVALEIVVDASAALSQRLVDGGLDVLVGDPAMVDATPLVTWTQPLFWVGARGCLLDPD
CCCEEEEEEECCHHHHHHHHHHCCCEEEECCCCEECCCCCEECCCHHHHHCCCCCEECCC
TPLPLVAFGGTCLWQQQVMTILRRAGLAWRVVCTSTSLPAVQSAVEAGLGVSVLLDGNIR
CCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCC
HDTMRVLGASDGLPEPPAADLGLFVRHAVSTQETAVDALQRFLCEELDLGLGLVDRSSSA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
ARR
CCC
>Mature Secondary Structure
MLMMRDFDNSLLRAFVTVAETGAVSAAAVRLARTQAAVSMQLRRLEDDIGQRLLERSPRG
CCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VRLTDAGHRLLPYAHAILGAGEDARRALEVGDVAGTVRLGMLEDVAVGRLPRALRRFSAA
EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPQVALEIVVDASAALSQRLVDGGLDVLVGDPAMVDATPLVTWTQPLFWVGARGCLLDPD
CCCEEEEEEECCHHHHHHHHHHCCCEEEECCCCEECCCCCEECCCHHHHHCCCCCEECCC
TPLPLVAFGGTCLWQQQVMTILRRAGLAWRVVCTSTSLPAVQSAVEAGLGVSVLLDGNIR
CCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCC
HDTMRVLGASDGLPEPPAADLGLFVRHAVSTQETAVDALQRFLCEELDLGLGLVDRSSSA
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
ARR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]