| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476589
Identifier: 186476589
GI number: 186476589
Start: 2092420
End: 2093793
Strand: Reverse
Name: 186476589
Synonym: Bphy_1832
Alternate gene names: NA
Gene position: 2093793-2092420 (Counterclockwise)
Preceding gene: 186476590
Following gene: 186476588
Centisome position: 60.18
GC content: 59.97
Gene sequence:
>1374_bases ATGGCTGGCATTGGTTTCGAACTTCGCAAGATCCTCAAGCACCAGACGCTGCTTGGCGTTGCACGTGCCTACGCGTATGC AGGCCTGATCAGCTCGGGCCCGCTGATCCTGTCGATCTTCGGCATCCTGGTGATCGGCGTGATGAGTCTCGCGTTCGTGA TACCGAAGTACGCGATCGTGCAGTTCCAGGTCTCGGTCACCTATCTGATTGCGTGCAGTCTGATACTGACGGGACCGCTG CAACTGTCGTTCACGCGCTTCATCTCGGACCGGTTGTTCGAGAAGCGCGACGACCTCGTGCTGTCGAACTACAACGGCGT CGTGCTGATGTCGACTGCGGCGTCGGGCGTGCTCGGCATGTTGGCCGTCGGCTTCGGTTTTCGCGGCGAGCCGCTCGTCT ACCGGCTGCTGATGGTGGCGGGCTTCGTCGTCGTCAGCAATATCTGGATCGCGGTGATCTTTCTGTCTAGCGTCAAGCAG TACCGGCAGATTCTGTACGTGTTCGCGCTGGGTTACGGCTGCACCGTCGCCTTTGCGCTGATGCTCAATACGCACGGCCT GTCGGGTCTGCTCGGCGGTTTCGTCGCCGGGCACGTGGTGCTGCTCGCGGGCTTGTCGGGGCTCATCTATCGCAACTATC GCAGCCCGCGCTTCATCTCATTCGAGGTGATCCACAAGCGCTTTGCTTATCCGAGGCTCGCGATGGTCGGCCTCCTGTTC AACCTCGGCGTGTGGATCGACAAGTTCATGTTCTGGTATGCGCCTGGCACGGGCGCGAAGGTGATCGGGCCGCTCAATGC TTCCGTGATTTACGACATTCCCGTGTTCATCGCCTACGTGTGCGTGATGCCGGGCATGGCGACCTTCCTCGTGCGCATCG AAGCGGATTTCGTCGAATACTACGACCGCTTTTACGACGCCGTGCGCAGCGGCGCGACACTGCGCCATATCAACGACATG CGCGACATGATGGTCGGCAGCGTGCGGGCGGGGCTCTACGAGATCGTGAAGATTCAGGCGGCCGTGCTGCTGCTGATTCT CGCGTTCGGCCGTCTGGTGCTCGATGCGCTCGGCATTTCGTCGCTGTACATGCCGCTAATGATCGTCGACGTGATCGCCG CGAGTCTGCAGGTGCTGCTGCTTGGCCTGCTGAACGTATTCTTCTATCTCGACGCGCGGCGCACGGTGTTGCGGCTGTGT ATTGCATTTGTGCTGTTGAACGGTATTCTGACGGGCATTACGCTGCTGATGCAGCCGGACTTCTATGGCTATGGCTTCGC GCTGACGCTGCTGATTCTCGTCGTCGCCGCGGTGCAGCTGCTCGATCGCAAGTTCGGCAAGCTCGAATACGAAACCTACA TGCTGCGCAACTAG
Upstream 100 bases:
>100_bases TGGCCGCGCCGTCGCGCGTCAAGGCGGCAGAAAGCGTGCAAGGCGGCTGTCCGATGCATACGGGCAGGGCGGCAGCGGCA CAGACGCGAGAGGTGCGCTG
Downstream 100 bases:
>100_bases GCGCTACGTGTCCGATCATGACAGCCAGTTCTCTCGCCCGCCTGGGCGTTTCGTGGATCGTCGTCGCATGCGCGGCCGTG GCGATCCTGTTGCTGTCGGT
Product: putative transmembrane protein
Products: NA
Alternate protein names: Inner Membrane Protein; Polysaccharide Synthase Transmembrane Protein; Transmembrane Protein Cog
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MAGIGFELRKILKHQTLLGVARAYAYAGLISSGPLILSIFGILVIGVMSLAFVIPKYAIVQFQVSVTYLIACSLILTGPL QLSFTRFISDRLFEKRDDLVLSNYNGVVLMSTAASGVLGMLAVGFGFRGEPLVYRLLMVAGFVVVSNIWIAVIFLSSVKQ YRQILYVFALGYGCTVAFALMLNTHGLSGLLGGFVAGHVVLLAGLSGLIYRNYRSPRFISFEVIHKRFAYPRLAMVGLLF NLGVWIDKFMFWYAPGTGAKVIGPLNASVIYDIPVFIAYVCVMPGMATFLVRIEADFVEYYDRFYDAVRSGATLRHINDM RDMMVGSVRAGLYEIVKIQAAVLLLILAFGRLVLDALGISSLYMPLMIVDVIAASLQVLLLGLLNVFFYLDARRTVLRLC IAFVLLNGILTGITLLMQPDFYGYGFALTLLILVVAAVQLLDRKFGKLEYETYMLRN
Sequences:
>Translated_457_residues MAGIGFELRKILKHQTLLGVARAYAYAGLISSGPLILSIFGILVIGVMSLAFVIPKYAIVQFQVSVTYLIACSLILTGPL QLSFTRFISDRLFEKRDDLVLSNYNGVVLMSTAASGVLGMLAVGFGFRGEPLVYRLLMVAGFVVVSNIWIAVIFLSSVKQ YRQILYVFALGYGCTVAFALMLNTHGLSGLLGGFVAGHVVLLAGLSGLIYRNYRSPRFISFEVIHKRFAYPRLAMVGLLF NLGVWIDKFMFWYAPGTGAKVIGPLNASVIYDIPVFIAYVCVMPGMATFLVRIEADFVEYYDRFYDAVRSGATLRHINDM RDMMVGSVRAGLYEIVKIQAAVLLLILAFGRLVLDALGISSLYMPLMIVDVIAASLQVLLLGLLNVFFYLDARRTVLRLC IAFVLLNGILTGITLLMQPDFYGYGFALTLLILVVAAVQLLDRKFGKLEYETYMLRN >Mature_456_residues AGIGFELRKILKHQTLLGVARAYAYAGLISSGPLILSIFGILVIGVMSLAFVIPKYAIVQFQVSVTYLIACSLILTGPLQ LSFTRFISDRLFEKRDDLVLSNYNGVVLMSTAASGVLGMLAVGFGFRGEPLVYRLLMVAGFVVVSNIWIAVIFLSSVKQY RQILYVFALGYGCTVAFALMLNTHGLSGLLGGFVAGHVVLLAGLSGLIYRNYRSPRFISFEVIHKRFAYPRLAMVGLLFN LGVWIDKFMFWYAPGTGAKVIGPLNASVIYDIPVFIAYVCVMPGMATFLVRIEADFVEYYDRFYDAVRSGATLRHINDMR DMMVGSVRAGLYEIVKIQAAVLLLILAFGRLVLDALGISSLYMPLMIVDVIAASLQVLLLGLLNVFFYLDARRTVLRLCI AFVLLNGILTGITLLMQPDFYGYGFALTLLILVVAAVQLLDRKFGKLEYETYMLRN
Specific function: Unknown
COG id: COG4267
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50547; Mature: 50415
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGIGFELRKILKHQTLLGVARAYAYAGLISSGPLILSIFGILVIGVMSLAFVIPKYAIV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFQVSVTYLIACSLILTGPLQLSFTRFISDRLFEKRDDLVLSNYNGVVLMSTAASGVLGM HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECHHHHHHHH LAVGFGFRGEPLVYRLLMVAGFVVVSNIWIAVIFLSSVKQYRQILYVFALGYGCTVAFAL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLNTHGLSGLLGGFVAGHVVLLAGLSGLIYRNYRSPRFISFEVIHKRFAYPRLAMVGLLF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHHHHHH NLGVWIDKFMFWYAPGTGAKVIGPLNASVIYDIPVFIAYVCVMPGMATFLVRIEADFVEY HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YDRFYDAVRSGATLRHINDMRDMMVGSVRAGLYEIVKIQAAVLLLILAFGRLVLDALGIS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLYMPLMIVDVIAASLQVLLLGLLNVFFYLDARRTVLRLCIAFVLLNGILTGITLLMQPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FYGYGFALTLLILVVAAVQLLDRKFGKLEYETYMLRN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC >Mature Secondary Structure AGIGFELRKILKHQTLLGVARAYAYAGLISSGPLILSIFGILVIGVMSLAFVIPKYAIV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFQVSVTYLIACSLILTGPLQLSFTRFISDRLFEKRDDLVLSNYNGVVLMSTAASGVLGM HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEECHHHHHHHH LAVGFGFRGEPLVYRLLMVAGFVVVSNIWIAVIFLSSVKQYRQILYVFALGYGCTVAFAL HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLNTHGLSGLLGGFVAGHVVLLAGLSGLIYRNYRSPRFISFEVIHKRFAYPRLAMVGLLF HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHHHHHH NLGVWIDKFMFWYAPGTGAKVIGPLNASVIYDIPVFIAYVCVMPGMATFLVRIEADFVEY HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YDRFYDAVRSGATLRHINDMRDMMVGSVRAGLYEIVKIQAAVLLLILAFGRLVLDALGIS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLYMPLMIVDVIAASLQVLLLGLLNVFFYLDARRTVLRLCIAFVLLNGILTGITLLMQPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FYGYGFALTLLILVVAAVQLLDRKFGKLEYETYMLRN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA