| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is 186476588
Identifier: 186476588
GI number: 186476588
Start: 2091437
End: 2092402
Strand: Reverse
Name: 186476588
Synonym: Bphy_1831
Alternate gene names: NA
Gene position: 2092402-2091437 (Counterclockwise)
Preceding gene: 186476589
Following gene: 186476586
Centisome position: 60.14
GC content: 63.77
Gene sequence:
>966_bases ATGACAGCCAGTTCTCTCGCCCGCCTGGGCGTTTCGTGGATCGTCGTCGCATGCGCGGCCGTGGCGATCCTGTTGCTGTC GGTTGCATGGGTGCGGCCCGCGCTGGCTGCGTCCAAGCGCGTGTCGTCGACGGGCATCGGTGCCGTTGCATTCTTCTACG GCGCGAACGTGCAGGCGGAGCGCTTCCAACCGTTCGACACCGTGGTGATCGAGCCAGACAGCGGTTTCGATCCGCGCACG CATACGGCGCACTGTCCCAACTGGTACGCGTATGTCAGTGTCGGCGAGGTGACGAAACAGCGCGCGTATTACGCCAGGAT GCCGAAGACCTGGTTCGCGGGCAGCAATACGGCGTGGTCGTCGACGATCGTCGATCAGACGGCACCCGGCTGGCCCGCAT TCTTCGTCGACGAGATCGTCAAGCCGCTGTGGGAGCGCGGCTATCGCGGCTTTTTTCTCGATACGCTGGATTCGTACCAG CTTGTCGCGAAGACGGACGTCGAGCGGGTGCACCAGCAGGCAGGCATCGTAGCCGTGCTGCACGCGTTGAAGGCGCGCTA TCCGCAGGCGCAACTGATACTGAATCGCGGCTTCGATATGCTGCCGCGGGTGCACGAGCAGGTCGCGGCCGTCGCGTTCG AATCGCTGTTCGGCCGCTGGGACCAGTCGAATCAACGCTACGACGACGTACCGGAGAACGATCGCGAATGGCTGCTTGGT CAGGCGCGGCAGATTCACGAGCGCTACCGTCTGCCCGTCATTTCAATCGATTACTGCCCGCCCGGCAACGATACCTGCCG CCGCGACATCGTGCGGAAGATCGCGGCGCTCGGCCTCGTGCCCTATGTGACGGATGGCGGTTTGCAGACTATTGGCGACG GTGGCACAGTGCTCGGCGACAGGGCGCCGCTGAGGAAGGTGAAGTTCAGGCGCCGACGCTCAGTGACGCTCACTGACACT CAGTGA
Upstream 100 bases:
>100_bases TGATTCTCGTCGTCGCCGCGGTGCAGCTGCTCGATCGCAAGTTCGGCAAGCTCGAATACGAAACCTACATGCTGCGCAAC TAGGCGCTACGTGTCCGATC
Downstream 100 bases:
>100_bases CACTCAGCGCAACTACGTGACGGCCAGCAGCAACACCATGCTGCCGATCGCGCCATCCAGCACGCGCCATGCAGTGGCGC GCTTGAAGAGCGGGGCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Polysaccharide Deacetylase; Polysaccharide Transport System Component Protein
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MTASSLARLGVSWIVVACAAVAILLLSVAWVRPALAASKRVSSTGIGAVAFFYGANVQAERFQPFDTVVIEPDSGFDPRT HTAHCPNWYAYVSVGEVTKQRAYYARMPKTWFAGSNTAWSSTIVDQTAPGWPAFFVDEIVKPLWERGYRGFFLDTLDSYQ LVAKTDVERVHQQAGIVAVLHALKARYPQAQLILNRGFDMLPRVHEQVAAVAFESLFGRWDQSNQRYDDVPENDREWLLG QARQIHERYRLPVISIDYCPPGNDTCRRDIVRKIAALGLVPYVTDGGLQTIGDGGTVLGDRAPLRKVKFRRRRSVTLTDT Q
Sequences:
>Translated_321_residues MTASSLARLGVSWIVVACAAVAILLLSVAWVRPALAASKRVSSTGIGAVAFFYGANVQAERFQPFDTVVIEPDSGFDPRT HTAHCPNWYAYVSVGEVTKQRAYYARMPKTWFAGSNTAWSSTIVDQTAPGWPAFFVDEIVKPLWERGYRGFFLDTLDSYQ LVAKTDVERVHQQAGIVAVLHALKARYPQAQLILNRGFDMLPRVHEQVAAVAFESLFGRWDQSNQRYDDVPENDREWLLG QARQIHERYRLPVISIDYCPPGNDTCRRDIVRKIAALGLVPYVTDGGLQTIGDGGTVLGDRAPLRKVKFRRRRSVTLTDT Q >Mature_320_residues TASSLARLGVSWIVVACAAVAILLLSVAWVRPALAASKRVSSTGIGAVAFFYGANVQAERFQPFDTVVIEPDSGFDPRTH TAHCPNWYAYVSVGEVTKQRAYYARMPKTWFAGSNTAWSSTIVDQTAPGWPAFFVDEIVKPLWERGYRGFFLDTLDSYQL VAKTDVERVHQQAGIVAVLHALKARYPQAQLILNRGFDMLPRVHEQVAAVAFESLFGRWDQSNQRYDDVPENDREWLLGQ ARQIHERYRLPVISIDYCPPGNDTCRRDIVRKIAALGLVPYVTDGGLQTIGDGGTVLGDRAPLRKVKFRRRRSVTLTDTQ
Specific function: Unknown
COG id: COG3868
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35919; Mature: 35788
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASSLARLGVSWIVVACAAVAILLLSVAWVRPALAASKRVSSTGIGAVAFFYGANVQAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHH RFQPFDTVVIEPDSGFDPRTHTAHCPNWYAYVSVGEVTKQRAYYARMPKTWFAGSNTAWS HCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEECCCCCCCC STIVDQTAPGWPAFFVDEIVKPLWERGYRGFFLDTLDSYQLVAKTDVERVHQQAGIVAVL HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHHHHHH HALKARYPQAQLILNRGFDMLPRVHEQVAAVAFESLFGRWDQSNQRYDDVPENDREWLLG HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH QARQIHERYRLPVISIDYCPPGNDTCRRDIVRKIAALGLVPYVTDGGLQTIGDGGTVLGD HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCC RAPLRKVKFRRRRSVTLTDTQ CCHHHHHHHHHHCCCEECCCC >Mature Secondary Structure TASSLARLGVSWIVVACAAVAILLLSVAWVRPALAASKRVSSTGIGAVAFFYGANVQAE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHH RFQPFDTVVIEPDSGFDPRTHTAHCPNWYAYVSVGEVTKQRAYYARMPKTWFAGSNTAWS HCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEECCCCCCCC STIVDQTAPGWPAFFVDEIVKPLWERGYRGFFLDTLDSYQLVAKTDVERVHQQAGIVAVL HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHHHHHH HALKARYPQAQLILNRGFDMLPRVHEQVAAVAFESLFGRWDQSNQRYDDVPENDREWLLG HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH QARQIHERYRLPVISIDYCPPGNDTCRRDIVRKIAALGLVPYVTDGGLQTIGDGGTVLGD HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCC RAPLRKVKFRRRRSVTLTDTQ CCHHHHHHHHHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA