| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is lip1 [H]
Identifier: 186476554
GI number: 186476554
Start: 2052122
End: 2053285
Strand: Reverse
Name: lip1 [H]
Synonym: Bphy_1796
Alternate gene names: 186476554
Gene position: 2053285-2052122 (Counterclockwise)
Preceding gene: 186476559
Following gene: 186476552
Centisome position: 59.02
GC content: 63.14
Gene sequence:
>1164_bases ATGACGGGCCTGTCTGCATTCATTGCCAGCCATTCCATCGCCATGACATTCCGTTCACCCTCTGTTGCCGCTTCCCTGAT CGCATGCGTCGCCGCGCTGGGCCTTGGTGCTTGTGCCAGCCGACCCGCCACCCAACTCACCACCCAACTCACCACACAAC CCGCCCCGGGCTCGTCCGTGACGTCGGCCGTTCCTGCTGCTAACGGTTCGGATAACGGCCCGGCATACGGCCCGGAACTG CAAGGCTTCGAATATCCGGCGCCCGTGCATCAGTTCGGATTCACCTCGCAAGGCGAGGCGCTGCACATGGCATATATGGA CATTGCACCCGCGCATCCTAACGGACGCACCGTCGTGTTGCTGCACGGCAAGAATTTTTGCGGCGCGACATGGGGCGACT CGCTCGAGCGGCTGTCGGCGGCGGGGTATCGCGTGATCGCGCCGGATCAGATCGGCTTTTGCAAATCGAGCAAGCCGCAG CGCTACCAGTTCAGCTTCCAGCAGCTCGCGCGCAACACGCATGCGCTGCTCGAATCGATTGGCGTGAAGAACGCGGCCAT CGTTGGCCATTCGACGGGCGGCATGCTCGCCGTCCGCTATGCATTGATGTACCCCGGCGAAACGCAGCAGCTGGTGCTCG TCAATCCCATCGGACTCGAAGACTGGAAGGTGAAGGGCGTGCCGCCGCTGTCCGTCGACCAGTGGTACGAGCGCGAGCTG AAGACGACAGCCGACGGCATCCGCCGCTATGAGCAGGCGACATACTATTCGGGGCAGTGGCGCAGCGCTTTCGAGCCGTG GGTGCAGATGCTCGCGGGGATGTATCGTGGACCGGGCAAAAAGGAAGTCGCGTGGGACTCCGCGCTGTTGTACGACATGA TTTATACGCAGCCGGTTTTTTATGAACTGGGGCAGGTGAGCGTGCCGACGCTGCTGTTGATCGGTCAGAAGGATACGACG GCGATCGGCAAGGATTCAGCGCCGCCAGAGGTGCGCGCGAAGCTCGGCCATTATCCGGAACTGGGTCGCGCGGCCGCCAA GGCGATTCCGCACGCGACGCTGGTTGAGTTTCCCGAGCTGGGGCACGCACCGCAGATGCAGGATCCCGCCGCATTCCACA AGGCGCTGCTCGATGGACTGGCCGCCGTTCCCGCCAACCGCTGA
Upstream 100 bases:
>100_bases AGCGCGCACGGCAAACGACTCGGGACTTTGGCGGTTGAACGAAGGGTTTTGACGGCCGCCGCTGCGAACGGCGCTGCACG GCGGCGGCAACGCGGGCATC
Downstream 100 bases:
>100_bases TAGCGGGTGACGCAAGCGCAGGCGAGCGTTGCCTTCGCCTGCGGCGTGCCTGTCAAGCGAGTTCGTCTCGCACCCGGGCG CCGATTTCGAACGAACGCAG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Triacylglycerol lipase [H]
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MTGLSAFIASHSIAMTFRSPSVAASLIACVAALGLGACASRPATQLTTQLTTQPAPGSSVTSAVPAANGSDNGPAYGPEL QGFEYPAPVHQFGFTSQGEALHMAYMDIAPAHPNGRTVVLLHGKNFCGATWGDSLERLSAAGYRVIAPDQIGFCKSSKPQ RYQFSFQQLARNTHALLESIGVKNAAIVGHSTGGMLAVRYALMYPGETQQLVLVNPIGLEDWKVKGVPPLSVDQWYEREL KTTADGIRRYEQATYYSGQWRSAFEPWVQMLAGMYRGPGKKEVAWDSALLYDMIYTQPVFYELGQVSVPTLLLIGQKDTT AIGKDSAPPEVRAKLGHYPELGRAAAKAIPHATLVEFPELGHAPQMQDPAAFHKALLDGLAAVPANR
Sequences:
>Translated_387_residues MTGLSAFIASHSIAMTFRSPSVAASLIACVAALGLGACASRPATQLTTQLTTQPAPGSSVTSAVPAANGSDNGPAYGPEL QGFEYPAPVHQFGFTSQGEALHMAYMDIAPAHPNGRTVVLLHGKNFCGATWGDSLERLSAAGYRVIAPDQIGFCKSSKPQ RYQFSFQQLARNTHALLESIGVKNAAIVGHSTGGMLAVRYALMYPGETQQLVLVNPIGLEDWKVKGVPPLSVDQWYEREL KTTADGIRRYEQATYYSGQWRSAFEPWVQMLAGMYRGPGKKEVAWDSALLYDMIYTQPVFYELGQVSVPTLLLIGQKDTT AIGKDSAPPEVRAKLGHYPELGRAAAKAIPHATLVEFPELGHAPQMQDPAAFHKALLDGLAAVPANR >Mature_386_residues TGLSAFIASHSIAMTFRSPSVAASLIACVAALGLGACASRPATQLTTQLTTQPAPGSSVTSAVPAANGSDNGPAYGPELQ GFEYPAPVHQFGFTSQGEALHMAYMDIAPAHPNGRTVVLLHGKNFCGATWGDSLERLSAAGYRVIAPDQIGFCKSSKPQR YQFSFQQLARNTHALLESIGVKNAAIVGHSTGGMLAVRYALMYPGETQQLVLVNPIGLEDWKVKGVPPLSVDQWYERELK TTADGIRRYEQATYYSGQWRSAFEPWVQMLAGMYRGPGKKEVAWDSALLYDMIYTQPVFYELGQVSVPTLLLIGQKDTTA IGKDSAPPEVRAKLGHYPELGRAAAKAIPHATLVEFPELGHAPQMQDPAAFHKALLDGLAAVPANR
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.3 [H]
Molecular weight: Translated: 41557; Mature: 41426
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLSAFIASHSIAMTFRSPSVAASLIACVAALGLGACASRPATQLTTQLTTQPAPGSSV CCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCH TSAVPAANGSDNGPAYGPELQGFEYPAPVHQFGFTSQGEALHMAYMDIAPAHPNGRTVVL HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEE LHGKNFCGATWGDSLERLSAAGYRVIAPDQIGFCKSSKPQRYQFSFQQLARNTHALLESI EECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH GVKNAAIVGHSTGGMLAVRYALMYPGETQQLVLVNPIGLEDWKVKGVPPLSVDQWYEREL CCCCEEEEECCCCCCEEEEHHHCCCCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHH KTTADGIRRYEQATYYSGQWRSAFEPWVQMLAGMYRGPGKKEVAWDSALLYDMIYTQPVF HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHH YELGQVSVPTLLLIGQKDTTAIGKDSAPPEVRAKLGHYPELGRAAAKAIPHATLVEFPEL HHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCC GHAPQMQDPAAFHKALLDGLAAVPANR CCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TGLSAFIASHSIAMTFRSPSVAASLIACVAALGLGACASRPATQLTTQLTTQPAPGSSV CCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCH TSAVPAANGSDNGPAYGPELQGFEYPAPVHQFGFTSQGEALHMAYMDIAPAHPNGRTVVL HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEE LHGKNFCGATWGDSLERLSAAGYRVIAPDQIGFCKSSKPQRYQFSFQQLARNTHALLESI EECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH GVKNAAIVGHSTGGMLAVRYALMYPGETQQLVLVNPIGLEDWKVKGVPPLSVDQWYEREL CCCCEEEEECCCCCCEEEEHHHCCCCCCCEEEEECCCCCCCCEECCCCCCCHHHHHHHHH KTTADGIRRYEQATYYSGQWRSAFEPWVQMLAGMYRGPGKKEVAWDSALLYDMIYTQPVF HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHH YELGQVSVPTLLLIGQKDTTAIGKDSAPPEVRAKLGHYPELGRAAAKAIPHATLVEFPEL HHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCCC GHAPQMQDPAAFHKALLDGLAAVPANR CCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7916627 [H]