| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476552
Identifier: 186476552
GI number: 186476552
Start: 2049550
End: 2050131
Strand: Reverse
Name: 186476552
Synonym: Bphy_1794
Alternate gene names: NA
Gene position: 2050131-2049550 (Counterclockwise)
Preceding gene: 186476554
Following gene: 186476551
Centisome position: 58.93
GC content: 59.79
Gene sequence:
>582_bases ATGTCATCGAAGATGATTACTCGCACCTCGTTGCGCAACTTGATGCTTTCCGTGGCTGTGGTGGGCGCGTTGTCCGCGCT TGCCGGCTGCGACGACCAGCAGAGCGAGCAAGCCGTGCAAAAACTCAAGGAATTTTTCAACACCGTCAAACCGGATGCGC TGCTTCTCAAAGGCCTGACGCCTGGCGTCACCACGCAAGCGCAAATCCGCGAACAGATGGGCAAGCCTGAAACGGAGCGC ACGTTCACCGACGGCTCGAAGCGGTTCGAATATCCGCGCGGCCCGCAAGGCCTCAACACGTACATGGTGGACATCGGCCC GGACGGCATCTTGCTGTCGATCACGCAGGTGCTGACGGCCGCGAACTTCGCGAAGATCCGCCCCGGCATGACGGAAGACG AGGTACGGCGTCTGCTGGGTAAACCAGGTGAGGTGGCCGTCTATCCGCTCAAGCCCGAAACTGTGTGGAGCTGGAAGTGG CGCGAAGGCGGCGTCACGCAAGAGGGTTTCTTCAATGTGCATTTCGACGCCAATCACGTCGTCTACACGACCTCTCGCTC GGATGTGATTCGCGGGCATTGA
Upstream 100 bases:
>100_bases AGCAATTCTTTAACTTTCCACACACATCCGCACGACGTTCCCACGCGAACGGGCCGCCGCACAGGTTATGCTCTGTGTCG TCCATACGTTTGTGTTCCGC
Downstream 100 bases:
>100_bases GCGCACGCGGCCGGACAGGCGGGCGTGGCGGGCGCAAAGCCTGCAAACGCCCGTAAAACAAAAGTCCGCCGCGCGAGTCC AATCAGAAAACGCCTGCAAA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSSKMITRTSLRNLMLSVAVVGALSALAGCDDQQSEQAVQKLKEFFNTVKPDALLLKGLTPGVTTQAQIREQMGKPETER TFTDGSKRFEYPRGPQGLNTYMVDIGPDGILLSITQVLTAANFAKIRPGMTEDEVRRLLGKPGEVAVYPLKPETVWSWKW REGGVTQEGFFNVHFDANHVVYTTSRSDVIRGH
Sequences:
>Translated_193_residues MSSKMITRTSLRNLMLSVAVVGALSALAGCDDQQSEQAVQKLKEFFNTVKPDALLLKGLTPGVTTQAQIREQMGKPETER TFTDGSKRFEYPRGPQGLNTYMVDIGPDGILLSITQVLTAANFAKIRPGMTEDEVRRLLGKPGEVAVYPLKPETVWSWKW REGGVTQEGFFNVHFDANHVVYTTSRSDVIRGH >Mature_192_residues SSKMITRTSLRNLMLSVAVVGALSALAGCDDQQSEQAVQKLKEFFNTVKPDALLLKGLTPGVTTQAQIREQMGKPETERT FTDGSKRFEYPRGPQGLNTYMVDIGPDGILLSITQVLTAANFAKIRPGMTEDEVRRLLGKPGEVAVYPLKPETVWSWKWR EGGVTQEGFFNVHFDANHVVYTTSRSDVIRGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21416; Mature: 21285
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKMITRTSLRNLMLSVAVVGALSALAGCDDQQSEQAVQKLKEFFNTVKPDALLLKGLT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC PGVTTQAQIREQMGKPETERTFTDGSKRFEYPRGPQGLNTYMVDIGPDGILLSITQVLTA CCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH ANFAKIRPGMTEDEVRRLLGKPGEVAVYPLKPETVWSWKWREGGVTQEGFFNVHFDANHV HHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEE VYTTSRSDVIRGH EEECCCCCCCCCC >Mature Secondary Structure SSKMITRTSLRNLMLSVAVVGALSALAGCDDQQSEQAVQKLKEFFNTVKPDALLLKGLT CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC PGVTTQAQIREQMGKPETERTFTDGSKRFEYPRGPQGLNTYMVDIGPDGILLSITQVLTA CCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH ANFAKIRPGMTEDEVRRLLGKPGEVAVYPLKPETVWSWKWREGGVTQEGFFNVHFDANHV HHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCEE VYTTSRSDVIRGH EEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA