Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 186476476

GI number: 186476476

Start: 1955124

End: 1956221

Strand: Reverse

Name: yhcM [H]

Synonym: Bphy_1718

Alternate gene names: 186476476

Gene position: 1956221-1955124 (Counterclockwise)

Preceding gene: 186476477

Following gene: 186476475

Centisome position: 56.23

GC content: 60.75

Gene sequence:

>1098_bases
ATGAACGTCACCGAATACTACGAACAGGAACTGCGGACACGGGGGTATGAGTCCGATCCGGCGCAACGCGCGGCCGTCGA
TCGTCTGCAGCGGTGCTATGAAGAGTGGACTGCATATAAGGCTCGTCGTCCGAACGCCTTTATGAAGCTGATCATGCATC
CCGATCTGCCGAAGGGCGTCTATATGTGGGGTGGGGTGGGACGCGGCAAGAGCTTCCTGATGGACAGCTTCTATGCGATC
GTGCCGCTCGTGCGTAAGACGCGTCTGCATTTCCACGAGTTCATGCGAGAGGTGCATCGCGAACTCGAAGAGCTGAAGGG
CCAAGCCGATCCGCTCGACGAACTCGCGCGGCGCATTGCGAAGCGTTATCGACTGATCTGCTTCGACGAATTTCACGTGT
CGGATATCGCGGACGCGATGATCCTGTATAGGCTGCTCGACCGGCTGTTCACGAACGGCGTGCAGTTCGTGATGACGTCC
AACTACGATCCCGACACGCTGTATCCCGACGGCCTGCATCGCGACCGTCTGCTGCCCGCCATCGAACTGATCAAGAGCAA
GCTCGACGTGATCAACGTCGACGCGGGAATCGACTACCGCCGGCGCACGCTGTCGCAGGTCGAGGTGTATCACACGCCGC
TCGGCGCTGCCTCGGACAAGGCGCTGCGCGACGCGTTCGCGAAGCTCGCCGCTGTGCCCGACGAAAGTCCGCTGCTGCAC
ATCGAGAAGCGCGAGTTGAAGGCGCTGCGTCGCGCGGACGGCGTTGTGTGGTTTGATTTCGCGACGCTCTGCGGCGGTCC
GCGCTCGCAGAACGACTACCTCGAGCTTGCGAGCCGCTTCCATGCCGTGATTCTGTCGGGTATTCCGCGGATGACGCCAC
GTATGCAATCCGAAGCACGCCGCTTCACCTGGCTCATCGACGTGTTCTACGATCACAAGGTCAAGCTGCTGATGTCGGCC
GCCGTGCCGCCCGGAGAGTTGTACACGGAAGGGCCGATGGCGAACGAGTTCACGCGCACGGTGTCGCGTATCGTCGAGAT
GCAGTCGCAAGAATATCTGGATGCGCCGCGACGGATTGTCGATACTTCGCTAACCTGA

Upstream 100 bases:

>100_bases
GTAAGACGCATCTGCCCGAATCTGATTCGGGGCACACGCGAATCACGACGAAGGCGGGTGGGTTGAATCCCTCCCGCCTT
CTTCATTGCTGCCTCACGAA

Downstream 100 bases:

>100_bases
TCGACTTTGCGTAGTCGCCGATCTGGATTGGGATAGCGTGTTGCGTGCGAACCCTTGATGCGGGCGCCACCGCTGTATTT
TCAAGATTCGGATTGGTCTG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVTEYYEQELRTRGYESDPAQRAAVDRLQRCYEEWTAYKARRPNAFMKLIMHPDLPKGVYMWGGVGRGKSFLMDSFYAI
VPLVRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFTNGVQFVMTS
NYDPDTLYPDGLHRDRLLPAIELIKSKLDVINVDAGIDYRRRTLSQVEVYHTPLGAASDKALRDAFAKLAAVPDESPLLH
IEKRELKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAVILSGIPRMTPRMQSEARRFTWLIDVFYDHKVKLLMSA
AVPPGELYTEGPMANEFTRTVSRIVEMQSQEYLDAPRRIVDTSLT

Sequences:

>Translated_365_residues
MNVTEYYEQELRTRGYESDPAQRAAVDRLQRCYEEWTAYKARRPNAFMKLIMHPDLPKGVYMWGGVGRGKSFLMDSFYAI
VPLVRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFTNGVQFVMTS
NYDPDTLYPDGLHRDRLLPAIELIKSKLDVINVDAGIDYRRRTLSQVEVYHTPLGAASDKALRDAFAKLAAVPDESPLLH
IEKRELKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAVILSGIPRMTPRMQSEARRFTWLIDVFYDHKVKLLMSA
AVPPGELYTEGPMANEFTRTVSRIVEMQSQEYLDAPRRIVDTSLT
>Mature_365_residues
MNVTEYYEQELRTRGYESDPAQRAAVDRLQRCYEEWTAYKARRPNAFMKLIMHPDLPKGVYMWGGVGRGKSFLMDSFYAI
VPLVRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFTNGVQFVMTS
NYDPDTLYPDGLHRDRLLPAIELIKSKLDVINVDAGIDYRRRTLSQVEVYHTPLGAASDKALRDAFAKLAAVPDESPLLH
IEKRELKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAVILSGIPRMTPRMQSEARRFTWLIDVFYDHKVKLLMSA
AVPPGELYTEGPMANEFTRTVSRIVEMQSQEYLDAPRRIVDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=402, Percent_Identity=33.0845771144279, Blast_Score=226, Evalue=2e-59,
Organism=Escherichia coli, GI1789627, Length=363, Percent_Identity=44.6280991735537, Blast_Score=286, Evalue=1e-78,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=31.3253012048193, Blast_Score=204, Evalue=5e-53,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=35.6466876971609, Blast_Score=173, Evalue=4e-44,
Organism=Drosophila melanogaster, GI20129913, Length=346, Percent_Identity=32.9479768786127, Blast_Score=176, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42329; Mature: 42329

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTEYYEQELRTRGYESDPAQRAAVDRLQRCYEEWTAYKARRPNAFMKLIMHPDLPKGV
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAIVPLVRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFTNGVQFVMTSNYDPDTLYPDGLHRDRLLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IELIKSKLDVINVDAGIDYRRRTLSQVEVYHTPLGAASDKALRDAFAKLAAVPDESPLLH
HHHHHHHHCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAVILSGIPRMTPRMQSEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVFYDHKVKLLMSAAVPPGELYTEGPMANEFTRTVSRIVEMQSQEYLDAPRRIV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC
>Mature Secondary Structure
MNVTEYYEQELRTRGYESDPAQRAAVDRLQRCYEEWTAYKARRPNAFMKLIMHPDLPKGV
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAIVPLVRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFTNGVQFVMTSNYDPDTLYPDGLHRDRLLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IELIKSKLDVINVDAGIDYRRRTLSQVEVYHTPLGAASDKALRDAFAKLAAVPDESPLLH
HHHHHHHHCEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRRADGVVWFDFATLCGGPRSQNDYLELASRFHAVILSGIPRMTPRMQSEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVFYDHKVKLLMSAAVPPGELYTEGPMANEFTRTVSRIVEMQSQEYLDAPRRIV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]