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The map label for this gene is yjjV [H]

Identifier: 186476202

GI number: 186476202

Start: 1625090

End: 1625878

Strand: Reverse

Name: yjjV [H]

Synonym: Bphy_1444

Alternate gene names: 186476202

Gene position: 1625878-1625090 (Counterclockwise)

Preceding gene: 186476203

Following gene: 186476201

Centisome position: 46.73

GC content: 62.86

Gene sequence:

>789_bases
ATGTGGATCGATACGCACTGTCATCTCGACGCGTCGGAATTCGACGCGGACCGCGATACCGTCGCGAGCGCGGCGTTCGA
CGCGGGCGTGAGCCGGATCGTGATTCCGGGCATTGCGCGCAGCAATTTTTCGACGGTGCGCGAACTGGCGCATCGCGTGG
AGGGCGGGGCGTATGCGCTTGGCATTCATCCCCTTTTCACGCCGCAGGCGCAGCCTGCCGATCTTGACGTGCTGCGCATG
GAAATCGAGGCGAGTCTTGCTGATCCGCGCTTCGTCGGGCTGGGCGAGATCGGTCTCGACTATTTCGTACAAGGGCTCGA
TGAGGACGCGCAGCAGTTCTACTACAACGAGCAACTGAAGCTCGCACGCGAATTCGATCTTCCCGTGATTTGCCACGTGC
GCAAGTCGCAGGACCAGGTGTTGAAGGGCCTGCGGCGCAACAACGTGCATCGCGGCATCGCGCACGCGTTCAACGGCAGT
TTCCAGCAGGCGCAGGCATTCATCGACCACGGCATGCATCTCGGCTTCGGCGGCAATGTGACGTTCGAGCGCGCGCTGCA
GATCCGCCGGCTCGCGGCGCAGCTACCGCTCGATGCGCTCGTGGTCGAAACCGATGCGCCCGATATCGCGCCTTCATGGC
GTTACAGGCAGCGCAACACGCCGGATCAGATCCCTGCGATCGGCGCGATTCTCGCCGAACAGCGCGGCATCGATCGAAAC
GAGCTCGCACTAGGCACAACGGCTAATGCGCACGCCGCATTGCCTCGGCTGGCCCTTTACCCTGCATAA

Upstream 100 bases:

>100_bases
GTTGCGACCGCATCATGCGTTTGCGCGATGGCGTGCTGTACGAGGAGCCGACGGTCCCCGTTTGAGTACCGTTGATTGCA
ACCAGAGGAATGCTGCGCGC

Downstream 100 bases:

>100_bases
TCACTCTCTGGCCTGCTTCGTGCATGACCGCTGATATTGATTCGGTATCCTGATGAATATAGCGGCGATGCCGCGCGGGC
GTCGGGCGCGGAGGCGGCAT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDASEFDADRDTVASAAFDAGVSRIVIPGIARSNFSTVRELAHRVEGGAYALGIHPLFTPQAQPADLDVLRM
EIEASLADPRFVGLGEIGLDYFVQGLDEDAQQFYYNEQLKLAREFDLPVICHVRKSQDQVLKGLRRNNVHRGIAHAFNGS
FQQAQAFIDHGMHLGFGGNVTFERALQIRRLAAQLPLDALVVETDAPDIAPSWRYRQRNTPDQIPAIGAILAEQRGIDRN
ELALGTTANAHAALPRLALYPA

Sequences:

>Translated_262_residues
MWIDTHCHLDASEFDADRDTVASAAFDAGVSRIVIPGIARSNFSTVRELAHRVEGGAYALGIHPLFTPQAQPADLDVLRM
EIEASLADPRFVGLGEIGLDYFVQGLDEDAQQFYYNEQLKLAREFDLPVICHVRKSQDQVLKGLRRNNVHRGIAHAFNGS
FQQAQAFIDHGMHLGFGGNVTFERALQIRRLAAQLPLDALVVETDAPDIAPSWRYRQRNTPDQIPAIGAILAEQRGIDRN
ELALGTTANAHAALPRLALYPA
>Mature_262_residues
MWIDTHCHLDASEFDADRDTVASAAFDAGVSRIVIPGIARSNFSTVRELAHRVEGGAYALGIHPLFTPQAQPADLDVLRM
EIEASLADPRFVGLGEIGLDYFVQGLDEDAQQFYYNEQLKLAREFDLPVICHVRKSQDQVLKGLRRNNVHRGIAHAFNGS
FQQAQAFIDHGMHLGFGGNVTFERALQIRRLAAQLPLDALVVETDAPDIAPSWRYRQRNTPDQIPAIGAILAEQRGIDRN
ELALGTTANAHAALPRLALYPA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=29.1512915129151, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=29.1828793774319, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI226061595, Length=234, Percent_Identity=28.6324786324786, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI14042943, Length=259, Percent_Identity=26.2548262548263, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI225903424, Length=230, Percent_Identity=26.9565217391304, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI225903439, Length=214, Percent_Identity=27.5700934579439, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI87082439, Length=252, Percent_Identity=37.6984126984127, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI48994985, Length=255, Percent_Identity=32.156862745098, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=31.496062992126, Blast_Score=119, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=23.826714801444, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71980746, Length=259, Percent_Identity=23.5521235521236, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=279, Percent_Identity=27.5985663082437, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI221330018, Length=220, Percent_Identity=29.5454545454545, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24586117, Length=220, Percent_Identity=29.5454545454545, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28928; Mature: 28928

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDASEFDADRDTVASAAFDAGVSRIVIPGIARSNFSTVRELAHRVEGGAYAL
CEECCEECCCHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEE
GIHPLFTPQAQPADLDVLRMEIEASLADPRFVGLGEIGLDYFVQGLDEDAQQFYYNEQLK
ECCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHH
LAREFDLPVICHVRKSQDQVLKGLRRNNVHRGIAHAFNGSFQQAQAFIDHGMHLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERALQIRRLAAQLPLDALVVETDAPDIAPSWRYRQRNTPDQIPAIGAILAEQRGIDRN
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
ELALGTTANAHAALPRLALYPA
HEEECCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MWIDTHCHLDASEFDADRDTVASAAFDAGVSRIVIPGIARSNFSTVRELAHRVEGGAYAL
CEECCEECCCHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEE
GIHPLFTPQAQPADLDVLRMEIEASLADPRFVGLGEIGLDYFVQGLDEDAQQFYYNEQLK
ECCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHH
LAREFDLPVICHVRKSQDQVLKGLRRNNVHRGIAHAFNGSFQQAQAFIDHGMHLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERALQIRRLAAQLPLDALVVETDAPDIAPSWRYRQRNTPDQIPAIGAILAEQRGIDRN
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
ELALGTTANAHAALPRLALYPA
HEEECCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]