| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476184
Identifier: 186476184
GI number: 186476184
Start: 1606365
End: 1607513
Strand: Reverse
Name: 186476184
Synonym: Bphy_1426
Alternate gene names: NA
Gene position: 1607513-1606365 (Counterclockwise)
Preceding gene: 186476185
Following gene: 186476183
Centisome position: 46.2
GC content: 64.14
Gene sequence:
>1149_bases ATGAAACGTTCCGCACTTTCCCTCCACGCAACGCGCCTGGCGGCGCTGACGCTTGCGGCTGGCACGGTTGTGTCGCTTTC TGGCTGCGAGTCGCTGAACGACATGCTCGCGTCGGACAAGGTGAATTACAAGGCGACGGCGAGCGCGCCGCCGCTGACCG TGCCGAGCGATCTGACGGCCGCGCAGATCGACCAGCGCTACGTCGCGCCGCCTGCGGGCACCGCGCTCGGCGGCGCGCCG GAGCGCGCAAAGACGGCAGCCGGCAATCTGACGGAAGGCGTGCCCAACGCGCAGGATCCGATGGGCATGCACGTCGAACG CGACGGCGACCGCCGCTGGCTGGTCGTGAACGGCCGCACCCCGGAGCAACTGTGGCCGCAGCTGCAGGAATTCTGGACGG AGAACGGTTTTTCGCTGAAGACGGACGCGCCGTCGACGGGCATCATGGCCACCGACTGGGCTGAAAACCGCGCGAACATT CCGGACGACTGGTTCCGTCGGACGGTCGGCAAGGTGATCGATTTCGCCTACTCGTCGGGCACGCGCGACAGTTTCCGTAC GCTGGTGTCGCGCGACACGAGCGGCGGCACCGACATTTCCATCACTCATGCAGCGATGGAAGAAGTGCTGACGGGGCAAG ACAAGACGTCGTCGCGCTGGGTCGAGCGGCCACGCAATCCGGCTCTCGAAGCCGAATTCCTCGCCAAGCTGATGCAGAAG TTCGGCCTTACCGACGCACAATCGAAGCAGCTGCTGACCGACGCGCGTCCAGCGACGGCTGCGGCGCAGCTCGACAAGGG TGCGGGCGGCGCGACTCTGGATCTACCGGAATCGTTCGATCGCGCGTGGCTGCGGGTCGGCCTCGCTCTCGACCGAACGA ACTTCACCGTCGACAACCGCGATCGCGAAAAAGGCATCTACTATGTCCGTTACGCGGATTCGATGCAGGAATTAAAGCGC GACGGTCTGTTCGGCAAGCTGTTCTACAGCGACAAGAGCACGAAGAAAGACGGCCACGAGTTCCTCGTCAATGTGCGCTC GAAGGGCGACGCGATGACGCAGGTGGCCGTCGTCGATTCGAACGGTCAGGTGGATACGTCATCGGACGCGCAGCGCATCG TGTCGCTGTTGCATGCGCAACTCAACTAA
Upstream 100 bases:
>100_bases GGTTTTTCAGGCGCCTTCCGGCATTTTTTCAACTGACGTCGATATCGCCCACGGTCCTGCACCGAATCCGGCAGCGCGTT CTAGCTTCACGAAGGACCTC
Downstream 100 bases:
>100_bases GGCGGGTCGTGCGATTCGCGAGTCTGGGAAGCGGTAGTGAAGGCAACGCACTGCTGGTCGAAGCTCAAAGCGGCGCGACG ACCACGCGGGTTCTGCTGGA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MKRSALSLHATRLAALTLAAGTVVSLSGCESLNDMLASDKVNYKATASAPPLTVPSDLTAAQIDQRYVAPPAGTALGGAP ERAKTAAGNLTEGVPNAQDPMGMHVERDGDRRWLVVNGRTPEQLWPQLQEFWTENGFSLKTDAPSTGIMATDWAENRANI PDDWFRRTVGKVIDFAYSSGTRDSFRTLVSRDTSGGTDISITHAAMEEVLTGQDKTSSRWVERPRNPALEAEFLAKLMQK FGLTDAQSKQLLTDARPATAAAQLDKGAGGATLDLPESFDRAWLRVGLALDRTNFTVDNRDREKGIYYVRYADSMQELKR DGLFGKLFYSDKSTKKDGHEFLVNVRSKGDAMTQVAVVDSNGQVDTSSDAQRIVSLLHAQLN
Sequences:
>Translated_382_residues MKRSALSLHATRLAALTLAAGTVVSLSGCESLNDMLASDKVNYKATASAPPLTVPSDLTAAQIDQRYVAPPAGTALGGAP ERAKTAAGNLTEGVPNAQDPMGMHVERDGDRRWLVVNGRTPEQLWPQLQEFWTENGFSLKTDAPSTGIMATDWAENRANI PDDWFRRTVGKVIDFAYSSGTRDSFRTLVSRDTSGGTDISITHAAMEEVLTGQDKTSSRWVERPRNPALEAEFLAKLMQK FGLTDAQSKQLLTDARPATAAAQLDKGAGGATLDLPESFDRAWLRVGLALDRTNFTVDNRDREKGIYYVRYADSMQELKR DGLFGKLFYSDKSTKKDGHEFLVNVRSKGDAMTQVAVVDSNGQVDTSSDAQRIVSLLHAQLN >Mature_382_residues MKRSALSLHATRLAALTLAAGTVVSLSGCESLNDMLASDKVNYKATASAPPLTVPSDLTAAQIDQRYVAPPAGTALGGAP ERAKTAAGNLTEGVPNAQDPMGMHVERDGDRRWLVVNGRTPEQLWPQLQEFWTENGFSLKTDAPSTGIMATDWAENRANI PDDWFRRTVGKVIDFAYSSGTRDSFRTLVSRDTSGGTDISITHAAMEEVLTGQDKTSSRWVERPRNPALEAEFLAKLMQK FGLTDAQSKQLLTDARPATAAAQLDKGAGGATLDLPESFDRAWLRVGLALDRTNFTVDNRDREKGIYYVRYADSMQELKR DGLFGKLFYSDKSTKKDGHEFLVNVRSKGDAMTQVAVVDSNGQVDTSSDAQRIVSLLHAQLN
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41643; Mature: 41643
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSALSLHATRLAALTLAAGTVVSLSGCESLNDMLASDKVNYKATASAPPLTVPSDLTA CCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH AQIDQRYVAPPAGTALGGAPERAKTAAGNLTEGVPNAQDPMGMHVERDGDRRWLVVNGRT HHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCC PEQLWPQLQEFWTENGFSLKTDAPSTGIMATDWAENRANIPDDWFRRTVGKVIDFAYSSG HHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC TRDSFRTLVSRDTSGGTDISITHAAMEEVLTGQDKTSSRWVERPRNPALEAEFLAKLMQK CHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH FGLTDAQSKQLLTDARPATAAAQLDKGAGGATLDLPESFDRAWLRVGLALDRTNFTVDNR HCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCEECCCHHHHHHHHHHHEEEECCCCEECCC DREKGIYYVRYADSMQELKRDGLFGKLFYSDKSTKKDGHEFLVNVRSKGDAMTQVAVVDS CCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECC NGQVDTSSDAQRIVSLLHAQLN CCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKRSALSLHATRLAALTLAAGTVVSLSGCESLNDMLASDKVNYKATASAPPLTVPSDLTA CCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH AQIDQRYVAPPAGTALGGAPERAKTAAGNLTEGVPNAQDPMGMHVERDGDRRWLVVNGRT HHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCC PEQLWPQLQEFWTENGFSLKTDAPSTGIMATDWAENRANIPDDWFRRTVGKVIDFAYSSG HHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC TRDSFRTLVSRDTSGGTDISITHAAMEEVLTGQDKTSSRWVERPRNPALEAEFLAKLMQK CHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHH FGLTDAQSKQLLTDARPATAAAQLDKGAGGATLDLPESFDRAWLRVGLALDRTNFTVDNR HCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCEECCCHHHHHHHHHHHEEEECCCCEECCC DREKGIYYVRYADSMQELKRDGLFGKLFYSDKSTKKDGHEFLVNVRSKGDAMTQVAVVDS CCCCCEEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECC NGQVDTSSDAQRIVSLLHAQLN CCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]