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The map label for this gene is yeaM [H]

Identifier: 186476133

GI number: 186476133

Start: 1543158

End: 1544042

Strand: Direct

Name: yeaM [H]

Synonym: Bphy_1375

Alternate gene names: 186476133

Gene position: 1543158-1544042 (Clockwise)

Preceding gene: 186476130

Following gene: 186476136

Centisome position: 44.35

GC content: 65.88

Gene sequence:

>885_bases
ATGACCGAAGTCGCCCGCTCAACGCCGCACGCATCGAAAGCGCCCGCCGAAATGTCGACCCGCGTCGATTTCGCCGACAT
TCCACCGGAGTTCGCGCCCACGCCGACGCATCCTATCCGCGTACGCTCGCGGCCCATGCCCGCCGGCGTGCGCATTGCGC
GGCATACGCACGCGTGGGCGCAAGTCGCCTATGCGTCGCGCGGCGTGCTGCGGGTCGGCACCTTCGGCACGACATGGATG
GTGCCGCCGTCGCGCGCGATCTGGATTCCACCGTATGTGTTGCATGAGGTGGCCATTGTCGAGGAGGCGTTCCTGCGCAC
GCTCTACGTCAACGAGACGGTCGTGCCAGCGGGGCTGGACGCATGTCGCGTCGTCGAGGTGTCGGGGCTGCTGCGCGAAG
TGATCGCCGCGCTCGACACAGCCGGCCTCGCGCCCGATCGAGAGCGCCTGCTCGGCTCCCTGGCGCTCGACGAAATCACA
CGGTCGCAACCACTGCCTCTGTCCGTGCCGATGCCGACCGAGAAACGTCTGCGTGCATTGTGCGAAGCCGTCATTGCCGA
TCCCGCCCATACCGAATCACTGGAACGATGCGCTTCGACAGTCGGCGCAAGTACCCGAACGATCGCGCGGCTCTTTCGGC
AGGAACTGGGGGTGAGTTTTTCCCAGTGGCGTCAGCAGGCCGTGCTGGCGCGGGCCATTCCGCTGCTTAGTCAGGGACGG
CCGTTATCGCACGTCGCGCGGGAATTGGGCTACCAGAGCCAGAGTGCCTTTTCAGCGATGTTCCGGCGCGCATTCGGGGA
AAGTCCACGGGCATTCATGGTGCGCGGCGCGGAACGCGGGCGCAATGACCGTGAACGGGAAGAAGAGGAGGACGAATCCC
GTTGA

Upstream 100 bases:

>100_bases
CGATGTCGCATCGTCCGTTCGGCCAATGGGCGGACAATACGCGCGCCCCTACAATGAGAACCATCTTGCGGCGGTTCCCC
GCCGCCCTATCCGTCACGCC

Downstream 100 bases:

>100_bases
TGCGGCACGCGAACGCCCCACGCCTGTGCGAGGGGGAAACAAAGTGCAATCGATGCGCCTGCAACGCTCTCAGACGCGCC
GCGCCATATGCCGGATCGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTEVARSTPHASKAPAEMSTRVDFADIPPEFAPTPTHPIRVRSRPMPAGVRIARHTHAWAQVAYASRGVLRVGTFGTTWM
VPPSRAIWIPPYVLHEVAIVEEAFLRTLYVNETVVPAGLDACRVVEVSGLLREVIAALDTAGLAPDRERLLGSLALDEIT
RSQPLPLSVPMPTEKRLRALCEAVIADPAHTESLERCASTVGASTRTIARLFRQELGVSFSQWRQQAVLARAIPLLSQGR
PLSHVARELGYQSQSAFSAMFRRAFGESPRAFMVRGAERGRNDREREEEEDESR

Sequences:

>Translated_294_residues
MTEVARSTPHASKAPAEMSTRVDFADIPPEFAPTPTHPIRVRSRPMPAGVRIARHTHAWAQVAYASRGVLRVGTFGTTWM
VPPSRAIWIPPYVLHEVAIVEEAFLRTLYVNETVVPAGLDACRVVEVSGLLREVIAALDTAGLAPDRERLLGSLALDEIT
RSQPLPLSVPMPTEKRLRALCEAVIADPAHTESLERCASTVGASTRTIARLFRQELGVSFSQWRQQAVLARAIPLLSQGR
PLSHVARELGYQSQSAFSAMFRRAFGESPRAFMVRGAERGRNDREREEEEDESR
>Mature_293_residues
TEVARSTPHASKAPAEMSTRVDFADIPPEFAPTPTHPIRVRSRPMPAGVRIARHTHAWAQVAYASRGVLRVGTFGTTWMV
PPSRAIWIPPYVLHEVAIVEEAFLRTLYVNETVVPAGLDACRVVEVSGLLREVIAALDTAGLAPDRERLLGSLALDEITR
SQPLPLSVPMPTEKRLRALCEAVIADPAHTESLERCASTVGASTRTIARLFRQELGVSFSQWRQQAVLARAIPLLSQGRP
LSHVARELGYQSQSAFSAMFRRAFGESPRAFMVRGAERGRNDREREEEEDESR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=31.6964285714286, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786251, Length=156, Percent_Identity=29.4871794871795, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32522; Mature: 32390

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEVARSTPHASKAPAEMSTRVDFADIPPEFAPTPTHPIRVRSRPMPAGVRIARHTHAWA
CCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHH
QVAYASRGVLRVGTFGTTWMVPPSRAIWIPPYVLHEVAIVEEAFLRTLYVNETVVPAGLD
HHHHHHCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ACRVVEVSGLLREVIAALDTAGLAPDRERLLGSLALDEITRSQPLPLSVPMPTEKRLRAL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
CEAVIADPAHTESLERCASTVGASTRTIARLFRQELGVSFSQWRQQAVLARAIPLLSQGR
HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PLSHVARELGYQSQSAFSAMFRRAFGESPRAFMVRGAERGRNDREREEEEDESR
CHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEECHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TEVARSTPHASKAPAEMSTRVDFADIPPEFAPTPTHPIRVRSRPMPAGVRIARHTHAWA
CCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHH
QVAYASRGVLRVGTFGTTWMVPPSRAIWIPPYVLHEVAIVEEAFLRTLYVNETVVPAGLD
HHHHHHCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ACRVVEVSGLLREVIAALDTAGLAPDRERLLGSLALDEITRSQPLPLSVPMPTEKRLRAL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
CEAVIADPAHTESLERCASTVGASTRTIARLFRQELGVSFSQWRQQAVLARAIPLLSQGR
HHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PLSHVARELGYQSQSAFSAMFRRAFGESPRAFMVRGAERGRNDREREEEEDESR
CHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHEEEECHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]