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The map label for this gene is ylbK [H]

Identifier: 186476136

GI number: 186476136

Start: 1547302

End: 1548378

Strand: Direct

Name: ylbK [H]

Synonym: Bphy_1378

Alternate gene names: 186476136

Gene position: 1547302-1548378 (Clockwise)

Preceding gene: 186476133

Following gene: 186476142

Centisome position: 44.47

GC content: 64.9

Gene sequence:

>1077_bases
ATGATGTGCGCGCGCCGTCCGCTCGACTTCATGCAGCCCGTGAAGATCGCCCGCCGGCGATCACGCTCGCAAGACCCGCG
GCGCGACGCCTTTGCATGGACGTCGGCGCCGTCGCTGGAGAATTCGTTGAAACCGTCATCGCCACGTTTGTCCCGCCGCA
CGTTCTCGATTGCCGCGGCCTCCGCTGTCCTGTCCGCCTGTGCGTCGACGGGCGTCAAGCCTGAGAACGTCACGCCCAAC
ACCGCCACCGTTCCGCCAGCGCCGCCCGAGATCAGACCGCAACGCCCGCTGCGCGTCGGCCTCGCACTCGGCGGCGGCGC
CGCGCGCGGCTTTGCGCATATCGGCGTCATCAAGGCGCTGGAAGCGCGCAACATCCAGGTCGATCTGATATGCGGGACGA
GCGCTGGGTCGGTGGTGGGCGCGTTGTATGCATCGGGGCTGAACGGCTTCGCGCTCAACAAGCTCGCGCTGACGATGGAT
GAGGCATCGATCAGTGACTGGGCGATGCCATTCCGCACGCGCGGCTTGTTGCAGGGCGTGGCGCTGCAGAACTATCTCAA
CAAGACCCTCGACAATCGCCCAATCGAAAAAATGGCGAAACCGCTCGGCGTCGTCGCAACCGATCTGAAAACGGGTCAGC
CGATTCTCTTCCAGCGCGGCAACACGGGAATCGCGGTGCGCGCGTCGTCGAGCGTGCCTTCGGTGTTCGAGCCCGTGAAG
ATCGGCGGACATGAGTACGTCGATGGCGGCCTGGTCAGCCCGGTGCCCGCGTCGTTCGCCCGAAAAATGGGCGCCGATTT
CGTGATCGCCGTCGACATCTCCGCGCGGCCCGAGACGTCCGTCACCGAAAGCTCGTTCGACGTGCTGATGCAGACGTTCA
CGATCATGGGTCAAACGATCAAGGCGTACGAGCTCGACAAATACGCGGACGTCGTGATTCGTCCGAATTTGAACGCGATG
AGCGGCACGGATTTCGGACAGCGCAATGCAGCGATTCTGGCGGGCGAGGAAGCCGCCGCGCGCGCCGCGCCAGAATTGTT
GCGCAAGCTGACGGCGGCACGGACCGCGGCCGTCTGA

Upstream 100 bases:

>100_bases
CACCCGGCCGCACACTGAGGCCGCGCATCGCTTCGAAGCGGGCCGCGCCACGTGTAGACGGTTTCTTCGGCCGATTGTCG
ACGTGCGTGCGCTTTGCATT

Downstream 100 bases:

>100_bases
CGCGCAAACTCAGAAAGCAGTACGTAAAAGGCCCGCTTCGAACGAAGCGGGCCTTTTGCTTGAAACGGGCAGTTAGACGA
TCGTCTTAGTTGCTGCCACC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MMCARRPLDFMQPVKIARRRSRSQDPRRDAFAWTSAPSLENSLKPSSPRLSRRTFSIAAASAVLSACASTGVKPENVTPN
TATVPPAPPEIRPQRPLRVGLALGGGAARGFAHIGVIKALEARNIQVDLICGTSAGSVVGALYASGLNGFALNKLALTMD
EASISDWAMPFRTRGLLQGVALQNYLNKTLDNRPIEKMAKPLGVVATDLKTGQPILFQRGNTGIAVRASSSVPSVFEPVK
IGGHEYVDGGLVSPVPASFARKMGADFVIAVDISARPETSVTESSFDVLMQTFTIMGQTIKAYELDKYADVVIRPNLNAM
SGTDFGQRNAAILAGEEAAARAAPELLRKLTAARTAAV

Sequences:

>Translated_358_residues
MMCARRPLDFMQPVKIARRRSRSQDPRRDAFAWTSAPSLENSLKPSSPRLSRRTFSIAAASAVLSACASTGVKPENVTPN
TATVPPAPPEIRPQRPLRVGLALGGGAARGFAHIGVIKALEARNIQVDLICGTSAGSVVGALYASGLNGFALNKLALTMD
EASISDWAMPFRTRGLLQGVALQNYLNKTLDNRPIEKMAKPLGVVATDLKTGQPILFQRGNTGIAVRASSSVPSVFEPVK
IGGHEYVDGGLVSPVPASFARKMGADFVIAVDISARPETSVTESSFDVLMQTFTIMGQTIKAYELDKYADVVIRPNLNAM
SGTDFGQRNAAILAGEEAAARAAPELLRKLTAARTAAV
>Mature_358_residues
MMCARRPLDFMQPVKIARRRSRSQDPRRDAFAWTSAPSLENSLKPSSPRLSRRTFSIAAASAVLSACASTGVKPENVTPN
TATVPPAPPEIRPQRPLRVGLALGGGAARGFAHIGVIKALEARNIQVDLICGTSAGSVVGALYASGLNGFALNKLALTMD
EASISDWAMPFRTRGLLQGVALQNYLNKTLDNRPIEKMAKPLGVVATDLKTGQPILFQRGNTGIAVRASSSVPSVFEPVK
IGGHEYVDGGLVSPVPASFARKMGADFVIAVDISARPETSVTESSFDVLMQTFTIMGQTIKAYELDKYADVVIRPNLNAM
SGTDFGQRNAAILAGEEAAARAAPELLRKLTAARTAAV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=227, Percent_Identity=31.7180616740088, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI116256487, Length=227, Percent_Identity=31.7180616740088, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI260656039, Length=227, Percent_Identity=31.7180616740088, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI260656037, Length=227, Percent_Identity=31.7180616740088, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI260656043, Length=227, Percent_Identity=31.7180616740088, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI148727335, Length=272, Percent_Identity=29.7794117647059, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI148727290, Length=272, Percent_Identity=29.7794117647059, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI226510936, Length=300, Percent_Identity=32.6666666666667, Blast_Score=139, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI71997299, Length=174, Percent_Identity=28.1609195402299, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997289, Length=174, Percent_Identity=28.1609195402299, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204778, Length=169, Percent_Identity=27.810650887574, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=189, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI281376913, Length=197, Percent_Identity=29.4416243654822, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28571388, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 37986; Mature: 37986

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCARRPLDFMQPVKIARRRSRSQDPRRDAFAWTSAPSLENSLKPSSPRLSRRTFSIAAA
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCCHHHCCCCCCCCHHHHHHHHHHH
SAVLSACASTGVKPENVTPNTATVPPAPPEIRPQRPLRVGLALGGGAARGFAHIGVIKAL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
EARNIQVDLICGTSAGSVVGALYASGLNGFALNKLALTMDEASISDWAMPFRTRGLLQGV
HHCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEHEEEEECCCCCHHHCCCHHHHHHHHHH
ALQNYLNKTLDNRPIEKMAKPLGVVATDLKTGQPILFQRGNTGIAVRASSSVPSVFEPVK
HHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCCEEEECCCCCEEEEECCCCCCHHCHHH
IGGHEYVDGGLVSPVPASFARKMGADFVIAVDISARPETSVTESSFDVLMQTFTIMGQTI
CCCCEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHH
KAYELDKYADVVIRPNLNAMSGTDFGQRNAAILAGEEAAARAAPELLRKLTAARTAAV
HHEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMCARRPLDFMQPVKIARRRSRSQDPRRDAFAWTSAPSLENSLKPSSPRLSRRTFSIAAA
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCCHHHCCCCCCCCHHHHHHHHHHH
SAVLSACASTGVKPENVTPNTATVPPAPPEIRPQRPLRVGLALGGGAARGFAHIGVIKAL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
EARNIQVDLICGTSAGSVVGALYASGLNGFALNKLALTMDEASISDWAMPFRTRGLLQGV
HHCCEEEEEEECCCCHHHHHHHHHCCCCCCEEEHEEEEECCCCCHHHCCCHHHHHHHHHH
ALQNYLNKTLDNRPIEKMAKPLGVVATDLKTGQPILFQRGNTGIAVRASSSVPSVFEPVK
HHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCCEEEECCCCCEEEEECCCCCCHHCHHH
IGGHEYVDGGLVSPVPASFARKMGADFVIAVDISARPETSVTESSFDVLMQTFTIMGQTI
CCCCEECCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHH
KAYELDKYADVVIRPNLNAMSGTDFGQRNAAILAGEEAAARAAPELLRKLTAARTAAV
HHEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]