| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yheS [H]
Identifier: 186476113
GI number: 186476113
Start: 1521523
End: 1523463
Strand: Direct
Name: yheS [H]
Synonym: Bphy_1355
Alternate gene names: 186476113
Gene position: 1521523-1523463 (Clockwise)
Preceding gene: 186476111
Following gene: 186476114
Centisome position: 43.73
GC content: 64.5
Gene sequence:
>1941_bases GTGATCCGCTTCAATCAGTTCAGTCTCGCGCGCGGCACGAAACCGCTTTTCGAACAGACCACGTTCGCGCTGAATCCTGG CGAAAAAGCCGGCCTCGTCGGTGCCAACGGCGCGGGTAAATCGACGCTGTTCTCCGTCCTGCTCGGCGATCTGCACGCCG ACGGCGGCGACGTTGCGATGCCGCCGTCGTGGCAGGTCGCGCATGTCGCGCAGGAAACGCCCGCCGTCGACAAGACCGCA CTCGAGTACACACTCGACGGCGACGCCGCGCTGCGCGCCATCGAAGCCCGCATCGCAGCCGCCTCCGCCGCGCACGACGG TGCGGCCGAAGCGGAGGCGCACGCCGCCTTCGCCGATGCCGACGGCTACACGGCCCCCGCTCGCGCCGAAGCGCTGCTGC TCGGCCTCGGTTTCACGCTCGACCAGACGCGTGCGGGCGTCGGCAGTTTTTCGGGCGGCTGGCGCATGCGCCTGAATCTC GCGCAGGCGCTGATGTGCCGTTCGGACCTGCTGCTGCTCGACGAGCCGACCAACCACCTGGATCTCGATGCCATCGTCTG GCTCGAAGACTGGCTGCACCGTTATCCGGGCACGCTGATCGTGATTTCGCACGACCGCGAATTTCTCGATTCGGTCTGCA ATGTTACGCTGCATCTCGAGAACCAGCAGATCAAACGATACGGCGGCAACTACTCGCAATTCGAAGTGCTGCGCGCGCAG CAGCTCGCGCTGCAGCAGAGCGCATACGAAAAGCAGCGCAAGACCATTGAGCATCTGCAGAGCTTCGTCGACCGCTTCAA GGCGAAGGCGACCAAGGCGCGCCAGGCGCAAAGCCGCATGAAAGCGCTCGAAAAAATGGAGCTGATCGCGCCCGCGCACA TTGCGTCGCCGTTCACGTTCGAATTCCGCACGCCCGACTCCGCGCCGAATCCGATGATGGTGATGGAAGACGTGCGTTGC GGTTATCACGGGGCGGACGGCAGCGAGCTTCCCATCGTCGAGCGCGTCGCGCTGTCCATCCAGAACGGGCAGCGCATCGG CCTGCTCGGCGCGAACGGTCAAGGCAAGTCGACGCTGATCAAGACACTCGCGGGCACGCTGGCCCCGCTCAGCGGCCATG TGCGCCAGGGCAAGGGCTTGCAGATCGGCTATTTCGCGCAGCATCAGTTGGAAACCCTTCGGCCCGACGACTCGCCGTTG CAGCATCTGGCGCGCCTCGCACCCGACACGCGCGAACAGGAACTGCGCGACTTCCTCGGCAGCTTCAACTTTTCCGGCGA CATGGCGACGGCCGCCATCGCGCCCTTCTCCGGCGGCGAGAAAGCACGTCTCGCACTCGCGCTGATCATCTGGCAGAAGC CGAACCTGCTGCTGCTCGACGAACCGACCAACCACCTCGACCTCGAAACGCGCCACGCGCTGACAATGGCGCTCGCGCAG TTCGAAGGCACGCTGATCCTCGTCTCGCATGACCGCCATTTGCTGCGCGCGACCACGGACCAGTTTATGCTCGTCGCGAA GCACAAGCTGCAGCCGTTCGACGGCGATCTCGACGACTACCGCGACTGGCTGCTGCAGCATGCCGCCGAGCAGCGTGCGG CGCTCAAGGCCGGCGACGCTTCGGCTGCGAACGACGGCGGCGCGGACGGAACGGTGAATCGCAAGGAGCAACGGCGGCTG GAAGCGGAAACGCGCCAGAAGCTTTCACATCTGAAGAAGCCGCTGCAAACGCGCATTGCGAAGATCGACAAGGAAATGGA CGCGCTGAACGCGGAAAAGGCGACGTTGGACGCGTTCGTCGCCGACCCTGCCAGCTACGCCGCGGAGCAAAAAACGAAGC TGACGGAAGCGATACGCCGTCAGGCGGATGTCAACGCACGACTCGAAACGCTCGAAGCCGAATGGCTCGAAGCGCACGAG GAACTCGAACAAATCGGCTAA
Upstream 100 bases:
>100_bases TCTAATGGCTCCGCGGCCGCGCGCCACCTAGCCGATCGGCCAATGCCTGAGCGTGCGCCGCGCAGTCTAAAATAGCGTTT TTCTTTCATCCGGCCTCGTT
Downstream 100 bases:
>100_bases CGGCCCCTTCGCCACCGCGACGGAACCAACCGGGAAGCAAGGCCGCGCCAGCAATCGTGGAGGGCTGGGCATTGTCGTCT ACTGCCGCACTGAAGGGCTT
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLVGANGAGKSTLFSVLLGDLHADGGDVAMPPSWQVAHVAQETPAVDKTA LEYTLDGDAALRAIEARIAAASAAHDGAAEAEAHAAFADADGYTAPARAEALLLGLGFTLDQTRAGVGSFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLIVISHDREFLDSVCNVTLHLENQQIKRYGGNYSQFEVLRAQ QLALQQSAYEKQRKTIEHLQSFVDRFKAKATKARQAQSRMKALEKMELIAPAHIASPFTFEFRTPDSAPNPMMVMEDVRC GYHGADGSELPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRQGKGLQIGYFAQHQLETLRPDDSPL QHLARLAPDTREQELRDFLGSFNFSGDMATAAIAPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHKLQPFDGDLDDYRDWLLQHAAEQRAALKAGDASAANDGGADGTVNRKEQRRL EAETRQKLSHLKKPLQTRIAKIDKEMDALNAEKATLDAFVADPASYAAEQKTKLTEAIRRQADVNARLETLEAEWLEAHE ELEQIG
Sequences:
>Translated_646_residues MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLVGANGAGKSTLFSVLLGDLHADGGDVAMPPSWQVAHVAQETPAVDKTA LEYTLDGDAALRAIEARIAAASAAHDGAAEAEAHAAFADADGYTAPARAEALLLGLGFTLDQTRAGVGSFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLIVISHDREFLDSVCNVTLHLENQQIKRYGGNYSQFEVLRAQ QLALQQSAYEKQRKTIEHLQSFVDRFKAKATKARQAQSRMKALEKMELIAPAHIASPFTFEFRTPDSAPNPMMVMEDVRC GYHGADGSELPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRQGKGLQIGYFAQHQLETLRPDDSPL QHLARLAPDTREQELRDFLGSFNFSGDMATAAIAPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHKLQPFDGDLDDYRDWLLQHAAEQRAALKAGDASAANDGGADGTVNRKEQRRL EAETRQKLSHLKKPLQTRIAKIDKEMDALNAEKATLDAFVADPASYAAEQKTKLTEAIRRQADVNARLETLEAEWLEAHE ELEQIG >Mature_646_residues MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLVGANGAGKSTLFSVLLGDLHADGGDVAMPPSWQVAHVAQETPAVDKTA LEYTLDGDAALRAIEARIAAASAAHDGAAEAEAHAAFADADGYTAPARAEALLLGLGFTLDQTRAGVGSFSGGWRMRLNL AQALMCRSDLLLLDEPTNHLDLDAIVWLEDWLHRYPGTLIVISHDREFLDSVCNVTLHLENQQIKRYGGNYSQFEVLRAQ QLALQQSAYEKQRKTIEHLQSFVDRFKAKATKARQAQSRMKALEKMELIAPAHIASPFTFEFRTPDSAPNPMMVMEDVRC GYHGADGSELPIVERVALSIQNGQRIGLLGANGQGKSTLIKTLAGTLAPLSGHVRQGKGLQIGYFAQHQLETLRPDDSPL QHLARLAPDTREQELRDFLGSFNFSGDMATAAIAPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ FEGTLILVSHDRHLLRATTDQFMLVAKHKLQPFDGDLDDYRDWLLQHAAEQRAALKAGDASAANDGGADGTVNRKEQRRL EAETRQKLSHLKKPLQTRIAKIDKEMDALNAEKATLDAFVADPASYAAEQKTKLTEAIRRQADVNARLETLEAEWLEAHE ELEQIG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=38.7640449438202, Blast_Score=353, Evalue=2e-97, Organism=Homo sapiens, GI10947137, Length=530, Percent_Identity=36.4150943396226, Blast_Score=323, Evalue=3e-88, Organism=Homo sapiens, GI27881506, Length=530, Percent_Identity=36.4150943396226, Blast_Score=323, Evalue=3e-88, Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=33.394495412844, Blast_Score=262, Evalue=7e-70, Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=33.394495412844, Blast_Score=262, Evalue=9e-70, Organism=Escherichia coli, GI1789751, Length=645, Percent_Identity=54.2635658914729, Blast_Score=699, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=35.538752362949, Blast_Score=331, Evalue=8e-92, Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=30.377358490566, Blast_Score=216, Evalue=3e-57, Organism=Escherichia coli, GI1787182, Length=547, Percent_Identity=31.0786106032907, Blast_Score=210, Evalue=3e-55, Organism=Escherichia coli, GI87081782, Length=568, Percent_Identity=25.8802816901408, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1788165, Length=182, Percent_Identity=33.5164835164835, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1790190, Length=233, Percent_Identity=23.6051502145923, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787758, Length=196, Percent_Identity=25.5102040816327, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=31.6582914572864, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788506, Length=199, Percent_Identity=25.6281407035176, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=532, Percent_Identity=35.5263157894737, Blast_Score=325, Evalue=4e-89, Organism=Caenorhabditis elegans, GI17555318, Length=531, Percent_Identity=34.6516007532957, Blast_Score=317, Evalue=9e-87, Organism=Caenorhabditis elegans, GI17559834, Length=558, Percent_Identity=31.5412186379928, Blast_Score=291, Evalue=7e-79, Organism=Saccharomyces cerevisiae, GI6321121, Length=555, Percent_Identity=33.8738738738739, Blast_Score=325, Evalue=1e-89, Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=31.8435754189944, Blast_Score=285, Evalue=1e-77, Organism=Saccharomyces cerevisiae, GI6325030, Length=386, Percent_Identity=31.0880829015544, Blast_Score=162, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6324314, Length=404, Percent_Identity=28.7128712871287, Blast_Score=154, Evalue=5e-38, Organism=Saccharomyces cerevisiae, GI6323278, Length=400, Percent_Identity=28, Blast_Score=147, Evalue=7e-36, Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=39.2045454545455, Blast_Score=378, Evalue=1e-105, Organism=Drosophila melanogaster, GI24642252, Length=553, Percent_Identity=36.8896925858951, Blast_Score=343, Evalue=3e-94, Organism=Drosophila melanogaster, GI18859989, Length=553, Percent_Identity=36.8896925858951, Blast_Score=343, Evalue=3e-94, Organism=Drosophila melanogaster, GI24641342, Length=548, Percent_Identity=34.1240875912409, Blast_Score=308, Evalue=7e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70923; Mature: 70923
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLVGANGAGKSTLFSVLLGDLHADGGDVAM CCEECCCHHCCCCCHHHHCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPSWQVAHVAQETPAVDKTALEYTLDGDAALRAIEARIAAASAAHDGAAEAEAHAAFADA CCCCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECC DGYTAPARAEALLLGLGFTLDQTRAGVGSFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEEEECCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYPGTLIVISHDREFLDSVCNVTLHLENQQIKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEECCHHHHHHCCCHHHHHHHHHH QLALQQSAYEKQRKTIEHLQSFVDRFKAKATKARQAQSRMKALEKMELIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEE EFRTPDSAPNPMMVMEDVRCGYHGADGSELPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGHVRQGKGLQIGYFAQHQLETLRPDDSPLQHLARLAPDTREQELRDFLG HHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH SFNFSGDMATAAIAPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHKLQPFDGDLDDYRDWLLQHAAEQRAALKAGDA HCCEEEEEECCCHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SAANDGGADGTVNRKEQRRLEAETRQKLSHLKKPLQTRIAKIDKEMDALNAEKATLDAFV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ADPASYAAEQKTKLTEAIRRQADVNARLETLEAEWLEAHEELEQIG CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLVGANGAGKSTLFSVLLGDLHADGGDVAM CCEECCCHHCCCCCHHHHCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCC PPSWQVAHVAQETPAVDKTALEYTLDGDAALRAIEARIAAASAAHDGAAEAEAHAAFADA CCCCCHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECC DGYTAPARAEALLLGLGFTLDQTRAGVGSFSGGWRMRLNLAQALMCRSDLLLLDEPTNHL CCCCCCHHHHEEEEECCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCEEEEECCCCCC DLDAIVWLEDWLHRYPGTLIVISHDREFLDSVCNVTLHLENQQIKRYGGNYSQFEVLRAQ CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEECCHHHHHHCCCHHHHHHHHHH QLALQQSAYEKQRKTIEHLQSFVDRFKAKATKARQAQSRMKALEKMELIAPAHIASPFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEE EFRTPDSAPNPMMVMEDVRCGYHGADGSELPIVERVALSIQNGQRIGLLGANGQGKSTLI EEECCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHH KTLAGTLAPLSGHVRQGKGLQIGYFAQHQLETLRPDDSPLQHLARLAPDTREQELRDFLG HHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHH SFNFSGDMATAAIAPFSGGEKARLALALIIWQKPNLLLLDEPTNHLDLETRHALTMALAQ CCCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHH FEGTLILVSHDRHLLRATTDQFMLVAKHKLQPFDGDLDDYRDWLLQHAAEQRAALKAGDA HCCEEEEEECCCHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SAANDGGADGTVNRKEQRRLEAETRQKLSHLKKPLQTRIAKIDKEMDALNAEKATLDAFV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH ADPASYAAEQKTKLTEAIRRQADVNARLETLEAEWLEAHEELEQIG CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]