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The map label for this gene is yfdE [H]

Identifier: 186476114

GI number: 186476114

Start: 1523520

End: 1524608

Strand: Direct

Name: yfdE [H]

Synonym: Bphy_1356

Alternate gene names: 186476114

Gene position: 1523520-1524608 (Clockwise)

Preceding gene: 186476113

Following gene: 186476118

Centisome position: 43.79

GC content: 66.94

Gene sequence:

>1089_bases
GTGGAGGGCTGGGCATTGTCGTCTACTGCCGCACTGAAGGGCTTGCGCGTGCTCGATCTGACGCGCCTGTTGCCCGGTCC
CGTCGCGACGCTCCGGCTTGCGGAAATGGGTGCCGACGTGTTGAAGATCGAAGCGCCCGGAGCCGGCGACGCGACGCGCA
CGATGATGCAGAGCACGGCCGACCGCGTGGCGGGACGCCCCGGCGCGTTTTACCGGCTCGTGAATCGCGGCAAGCGCGAA
ACGCGGCTGGATCTGAAGTCGGAAGGCGGCCGCACGGTGCTGATGGCGCTGGCGCGCGAAGCCGATGTGCTGGTCGAAAG
CTTCCGTCCCGGCGTGATGGACCGGCTCGGCGTGGGTTATGACGTGCTGCGCGTCATCAACCCGAAGCTCGTCTATTGCG
CAATTTCCGGCTACGGCGCGGACGGCCCGTTTGCCGAACTCGCCGGGCACGATCTGAACTACATCGCTTATGCGGGCGTG
CTGGACCAACTGGCATCGCACGACGGCGCGCCCATCCTGCCCAACTTCCAGATCGCAGACCTGCTGGGCGGCGCGCTATC
CGCCGTCAACCAGATACTCGCCGCGCTGTGGGCCGTTGCGCGCGGCGGCGACGGGCGTTTCGTCGACGTATCCATGGCGC
ACTGCACGTACGCGAACAACGTCGTTGCGCAGGTGGCGCTCGCCAACGACGGCACAGCGCCTGTCGCGGGAAGCAGTCTG
CTGAATGGCGGCGTACCCTGCTACAACCTCTACCGCACGCTCGACGGACGATGGCTCGCCGTCGGCGCACTCGAACTCAA
ATTCTGGGAAACGCTGTGCATGGCGCTCGACCGCCCGGACTGGGCGACGCGCCACTGGAGTCTCGGCCAGTCGATAGCCG
GACCGGATGCGGTACAACTGATCAAGGACATGGCTAACGTGATCGCCACGCGCCCGCTTGACGAATGGGTCACGCTGCTG
GTGCCGCTGGATTGCTGCGTGGCGCCCGTACTGACGCCGGCGGAGGCTGCCCAGCACCCGCTATTCAACGAGGCCGCGCG
GGAAGCGCTGCTCGCGCAGGCTGGCGACGAGGCGTCCGAATCCGAATAG

Upstream 100 bases:

>100_bases
CCGAATGGCTCGAAGCGCACGAGGAACTCGAACAAATCGGCTAACGGCCCCTTCGCCACCGCGACGGAACCAACCGGGAA
GCAAGGCCGCGCCAGCAATC

Downstream 100 bases:

>100_bases
GCCCGCGAGTGCCGCGCAGATGAGTTCGCGCCCGGTTCAACGCCGCGGCAAGGTCTGCCGGGGCTCCCGTTCGTCGTCGA
TCAACCGGTGCTTGCGGCCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MEGWALSSTAALKGLRVLDLTRLLPGPVATLRLAEMGADVLKIEAPGAGDATRTMMQSTADRVAGRPGAFYRLVNRGKRE
TRLDLKSEGGRTVLMALAREADVLVESFRPGVMDRLGVGYDVLRVINPKLVYCAISGYGADGPFAELAGHDLNYIAYAGV
LDQLASHDGAPILPNFQIADLLGGALSAVNQILAALWAVARGGDGRFVDVSMAHCTYANNVVAQVALANDGTAPVAGSSL
LNGGVPCYNLYRTLDGRWLAVGALELKFWETLCMALDRPDWATRHWSLGQSIAGPDAVQLIKDMANVIATRPLDEWVTLL
VPLDCCVAPVLTPAEAAQHPLFNEAAREALLAQAGDEASESE

Sequences:

>Translated_362_residues
MEGWALSSTAALKGLRVLDLTRLLPGPVATLRLAEMGADVLKIEAPGAGDATRTMMQSTADRVAGRPGAFYRLVNRGKRE
TRLDLKSEGGRTVLMALAREADVLVESFRPGVMDRLGVGYDVLRVINPKLVYCAISGYGADGPFAELAGHDLNYIAYAGV
LDQLASHDGAPILPNFQIADLLGGALSAVNQILAALWAVARGGDGRFVDVSMAHCTYANNVVAQVALANDGTAPVAGSSL
LNGGVPCYNLYRTLDGRWLAVGALELKFWETLCMALDRPDWATRHWSLGQSIAGPDAVQLIKDMANVIATRPLDEWVTLL
VPLDCCVAPVLTPAEAAQHPLFNEAAREALLAQAGDEASESE
>Mature_362_residues
MEGWALSSTAALKGLRVLDLTRLLPGPVATLRLAEMGADVLKIEAPGAGDATRTMMQSTADRVAGRPGAFYRLVNRGKRE
TRLDLKSEGGRTVLMALAREADVLVESFRPGVMDRLGVGYDVLRVINPKLVYCAISGYGADGPFAELAGHDLNYIAYAGV
LDQLASHDGAPILPNFQIADLLGGALSAVNQILAALWAVARGGDGRFVDVSMAHCTYANNVVAQVALANDGTAPVAGSSL
LNGGVPCYNLYRTLDGRWLAVGALELKFWETLCMALDRPDWATRHWSLGQSIAGPDAVQLIKDMANVIATRPLDEWVTLL
VPLDCCVAPVLTPAEAAQHPLFNEAAREALLAQAGDEASESE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=331, Percent_Identity=35.6495468277946, Blast_Score=195, Evalue=6e-50,
Organism=Homo sapiens, GI266456254, Length=331, Percent_Identity=35.6495468277946, Blast_Score=195, Evalue=7e-50,
Organism=Homo sapiens, GI266458393, Length=268, Percent_Identity=37.6865671641791, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=37.8787878787879, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI300863128, Length=323, Percent_Identity=30.9597523219814, Blast_Score=161, Evalue=8e-40,
Organism=Homo sapiens, GI300863124, Length=323, Percent_Identity=30.9597523219814, Blast_Score=161, Evalue=9e-40,
Organism=Homo sapiens, GI300863126, Length=315, Percent_Identity=27.6190476190476, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI13376042, Length=323, Percent_Identity=27.8637770897833, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=40, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=40, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI87082093, Length=348, Percent_Identity=29.0229885057471, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1788717, Length=360, Percent_Identity=26.1111111111111, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=339, Percent_Identity=29.2035398230088, Blast_Score=144, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=29.7935103244838, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24585488, Length=330, Percent_Identity=33.030303030303, Blast_Score=161, Evalue=6e-40,
Organism=Drosophila melanogaster, GI24648431, Length=331, Percent_Identity=29.607250755287, Blast_Score=139, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38446; Mature: 38446

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGWALSSTAALKGLRVLDLTRLLPGPVATLRLAEMGADVLKIEAPGAGDATRTMMQSTA
CCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
DRVAGRPGAFYRLVNRGKRETRLDLKSEGGRTVLMALAREADVLVESFRPGVMDRLGVGY
HHHCCCCHHHHHHHHCCCHHHCCCHHCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHCCCH
DVLRVINPKLVYCAISGYGADGPFAELAGHDLNYIAYAGVLDQLASHDGAPILPNFQIAD
HHHHHCCCEEEEEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LLGGALSAVNQILAALWAVARGGDGRFVDVSMAHCTYANNVVAQVALANDGTAPVAGSSL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCHHEEEEEECCCCCCCCCCCHH
LNGGVPCYNLYRTLDGRWLAVGALELKFWETLCMALDRPDWATRHWSLGQSIAGPDAVQL
HCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHH
IKDMANVIATRPLDEWVTLLVPLDCCVAPVLTPAEAAQHPLFNEAAREALLAQAGDEASE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCC
SE
CC
>Mature Secondary Structure
MEGWALSSTAALKGLRVLDLTRLLPGPVATLRLAEMGADVLKIEAPGAGDATRTMMQSTA
CCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
DRVAGRPGAFYRLVNRGKRETRLDLKSEGGRTVLMALAREADVLVESFRPGVMDRLGVGY
HHHCCCCHHHHHHHHCCCHHHCCCHHCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHCCCH
DVLRVINPKLVYCAISGYGADGPFAELAGHDLNYIAYAGVLDQLASHDGAPILPNFQIAD
HHHHHCCCEEEEEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
LLGGALSAVNQILAALWAVARGGDGRFVDVSMAHCTYANNVVAQVALANDGTAPVAGSSL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCHHEEEEEECCCCCCCCCCCHH
LNGGVPCYNLYRTLDGRWLAVGALELKFWETLCMALDRPDWATRHWSLGQSIAGPDAVQL
HCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHH
IKDMANVIATRPLDEWVTLLVPLDCCVAPVLTPAEAAQHPLFNEAAREALLAQAGDEASE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]