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The map label for this gene is ydfH [H]

Identifier: 186476061

GI number: 186476061

Start: 1462052

End: 1462768

Strand: Reverse

Name: ydfH [H]

Synonym: Bphy_1303

Alternate gene names: 186476061

Gene position: 1462768-1462052 (Counterclockwise)

Preceding gene: 186476062

Following gene: 186476060

Centisome position: 42.04

GC content: 64.99

Gene sequence:

>717_bases
ATGTCAGAGACACCTAACGCCGCCTCGAGCAGCACGAAACCCGAAGCCATCGCCGAACGCATTCGCGCCGCGATCCTCGA
GCATCGGCTCGCGCCTGGCGCGAAATTGACGGAAGCCCAGTTGTGCGAAGTGTTCGGCGTGAAGCGCGGACCGATCCGCC
AGGCGCTGGCCCTGTTGGCCACCGACCGCCTCGTCGACCTGGAGCCGAACCGCGGCGCGTTTGTCGCGAGTCCGTCGCTG
CAGGAAGTGCATGAAGTGTTCGAGATGCGCCGGATCATCGAGTTGGCCGTCGTCGACAAGATTTGCGCGAGCCAGGGCTC
GCGGCGTTTGAAGAACATCGGCGGGATGATCGCGCGGGAGCGCAAGGCGTTCGAATCGCGGGACTTTTCGACGTGGATCA
GATTGTCGGGCGAGTTCCACACGGAGCTTGCGTCGCTGACGGGCAACACGGTGCTGTGCGATTGCCTCGGCGGGCTGGTG
GCGCGCTCGACGCTGATCTCGGCGCTGTACGAATCGCTGGGCCGCAGCCCTTGTTCGTTCGAAGACCACGAAGCGATTCT
TGCCGCGCTCGACGCGGGTGACGCAACGACAGCGGGCGCGCTGATGTCGCGTCACCTGGAGAGCGTCGAATTGAAGATGC
TCGATCGGCCGGCTAGCGGTGGGACCGATCTGCACGAAGTATTCGGCATGCGAGCCCCGCAGGCGGCAGGCCGCTGA

Upstream 100 bases:

>100_bases
TGCGTGTCAGTCGTAACCAAAATAGTCGAAAATCAGCCGCTGAAATTGTTGACAATTTTTATGTCCATCCTAAGATGGTC
CACATAACAGCACGCCGATC

Downstream 100 bases:

>100_bases
AGATCGTCGCGCGCGTGCCGACGCCCGCCCGCTGGCGGTGCGCGCCGCACAGAAGTGAACCGTGATTGACGGGGAAGTCG
ACCTGTCCACCCAAAGGCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSETPNAASSSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLATDRLVDLEPNRGAFVASPSL
QEVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARERKAFESRDFSTWIRLSGEFHTELASLTGNTVLCDCLGGLV
ARSTLISALYESLGRSPCSFEDHEAILAALDAGDATTAGALMSRHLESVELKMLDRPASGGTDLHEVFGMRAPQAAGR

Sequences:

>Translated_238_residues
MSETPNAASSSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLATDRLVDLEPNRGAFVASPSL
QEVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARERKAFESRDFSTWIRLSGEFHTELASLTGNTVLCDCLGGLV
ARSTLISALYESLGRSPCSFEDHEAILAALDAGDATTAGALMSRHLESVELKMLDRPASGGTDLHEVFGMRAPQAAGR
>Mature_237_residues
SETPNAASSSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLATDRLVDLEPNRGAFVASPSLQ
EVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARERKAFESRDFSTWIRLSGEFHTELASLTGNTVLCDCLGGLVA
RSTLISALYESLGRSPCSFEDHEAILAALDAGDATTAGALMSRHLESVELKMLDRPASGGTDLHEVFGMRAPQAAGR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=25.3658536585366, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25654; Mature: 25522

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETPNAASSSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
TDRLVDLEPNRGAFVASPSLQEVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARE
HHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKAFESRDFSTWIRLSGEFHTELASLTGNTVLCDCLGGLVARSTLISALYESLGRSPCSF
HHHHHCCCHHHHHEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EDHEAILAALDAGDATTAGALMSRHLESVELKMLDRPASGGTDLHEVFGMRAPQAAGR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SETPNAASSSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
TDRLVDLEPNRGAFVASPSLQEVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARE
HHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKAFESRDFSTWIRLSGEFHTELASLTGNTVLCDCLGGLVARSTLISALYESLGRSPCSF
HHHHHCCCHHHHHEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EDHEAILAALDAGDATTAGALMSRHLESVELKMLDRPASGGTDLHEVFGMRAPQAAGR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]