| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475829
Identifier: 186475829
GI number: 186475829
Start: 1195972
End: 1197432
Strand: Direct
Name: 186475829
Synonym: Bphy_1064
Alternate gene names: NA
Gene position: 1195972-1197432 (Clockwise)
Preceding gene: 186475828
Following gene: 186475830
Centisome position: 34.38
GC content: 66.12
Gene sequence:
>1461_bases ATGTCGTCGATTGCACGAGCGGGCATCGAGGGCACGTCGCGCGCCGTCAGGCGCGAGCGCCGCGACTGGCTGCCGCCTGC GTTGCTGTGGCTCGTCACGGCGATGCTGATCGTCGCGCACCAGGGCACGGTGCTCACGCTCGCGTTCCCGGTGCTGTCGA TCGCCGTCGGGTTCTGGCTGTACTTCAAGGCGCCCGCGAAATATGTCGGCTACATGTGGTGGCTGTGGTTCCTGAGCCCC GAAGTGCGGCGTCTCGCCGACTGGTCCAAAGGCGCGTTCACGCCAACCAGCCTGATCCAGGTCGCGCCGCTCGCCGTCAC GATGATCAGCGGGCTCTCGCTGATCCGCTTCTACCCCATGCTTGCGCAACGGCGTGGCTTGCCCGTGCTGCTGGTGCTCG GCGGACTCGCGTATGCGTTCGTGATCGGCGTGGTGTCGGCGGGGCCGCTCGCGGCGCTGTACGACCTCGCCAACTGGGTG TATCCGCTCCTGATCGGCTTTCACATCATGGCGCACTCGCGCCAGTACCCGGTGTTCCGCGAGACCATCGTCAACACCTT CATCTGGGGCATGCTGCTGATGGGAGGCTACGGCCTCGTGCAGTTTTTCATCATGCCGCAGTGGGACGCGCTGTGGATGC TCGGCTCGCAGATGAACTCGCAGGGCGACCCGGTGCCGTTCGGCGTGCGCGTGTTCAGCACGATGAATTCGTCGGGTCCG TTCGCGCTCGCGATGATGGGCGCGATGGTCTACGTGATGGCCGCGAACCATCGCGTGCGCTGGCTGGCGGGCGCGTTCGG CTTCCTGTCGTTCTGCCTGTCGCTGGTGCGCTCGACGTGGGGCGGCTGGGTGATCGCGATGCTCATCCAGCTCGTGAAGT CGGACAACAAGGTGCGCATGCGCATCGTCGCGAGCGCGGTGCTGCTGACAGGCCTGTGCGTGCCGCTGCTCGCCGTCGGT CCCGTCGCCGAGCGGATGCAGGCGCGCCTCGACACGATCGTCAATCTGCACGACGACCAGAGCTACGCCGCGCGCAACGA GTTCTACGCGACCTTCGCGAAGACGGCATTCACGGACGTGACGGGCGAAGGGCTGGGCGCGACGGGCACCTCGACGAAGC TCTCCAGCGACGGCGGCCAGCTCGGCCAGTACGGCAACTTCGACAGCGGCGTGATGAACATTCCGTTCGTGCTCGGCTGG CCGGGCACGCTGCTGTACATGTCGGGCGTGATCTGGCTGCTGATGCGCGCGCTGCGCGCGTCGTTCAGGCTGCGCGACGA CAAGTTCGCATCGGCGTCGCTGTCGCTCGCGCTCGCGATCTTCGCGATGCTCGTGTTCACCAATTCGCTCGTCGGCACGG GCGGCCTGCTGCTGTTCATGGGCGTGTTCTCGATTCTTTCCGCGGCGCACTATCAGAAGCTGAACGGGCGCCGCCAATCA TTCTTTCATGGAGGCCGCTGA
Upstream 100 bases:
>100_bases GCGCGGTCGGACGGCGCAGCAGGGCAAGCGCGAACGCGAGCACGGACACACGCATCAAGCCGACGCCGTGCCGTCGCAGA GCCGGGGAGGGCGGTAAGCG
Downstream 100 bases:
>100_bases GTGAGAGTTGCCATCGTCACGCACGTGGTGCGTCATAACGACGGGCAGGGCCGCGTCAATCACGAGATCGCGCGCGCGGC GCTCGACGAGAACATCGAGG
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MSSIARAGIEGTSRAVRRERRDWLPPALLWLVTAMLIVAHQGTVLTLAFPVLSIAVGFWLYFKAPAKYVGYMWWLWFLSP EVRRLADWSKGAFTPTSLIQVAPLAVTMISGLSLIRFYPMLAQRRGLPVLLVLGGLAYAFVIGVVSAGPLAALYDLANWV YPLLIGFHIMAHSRQYPVFRETIVNTFIWGMLLMGGYGLVQFFIMPQWDALWMLGSQMNSQGDPVPFGVRVFSTMNSSGP FALAMMGAMVYVMAANHRVRWLAGAFGFLSFCLSLVRSTWGGWVIAMLIQLVKSDNKVRMRIVASAVLLTGLCVPLLAVG PVAERMQARLDTIVNLHDDQSYAARNEFYATFAKTAFTDVTGEGLGATGTSTKLSSDGGQLGQYGNFDSGVMNIPFVLGW PGTLLYMSGVIWLLMRALRASFRLRDDKFASASLSLALAIFAMLVFTNSLVGTGGLLLFMGVFSILSAAHYQKLNGRRQS FFHGGR
Sequences:
>Translated_486_residues MSSIARAGIEGTSRAVRRERRDWLPPALLWLVTAMLIVAHQGTVLTLAFPVLSIAVGFWLYFKAPAKYVGYMWWLWFLSP EVRRLADWSKGAFTPTSLIQVAPLAVTMISGLSLIRFYPMLAQRRGLPVLLVLGGLAYAFVIGVVSAGPLAALYDLANWV YPLLIGFHIMAHSRQYPVFRETIVNTFIWGMLLMGGYGLVQFFIMPQWDALWMLGSQMNSQGDPVPFGVRVFSTMNSSGP FALAMMGAMVYVMAANHRVRWLAGAFGFLSFCLSLVRSTWGGWVIAMLIQLVKSDNKVRMRIVASAVLLTGLCVPLLAVG PVAERMQARLDTIVNLHDDQSYAARNEFYATFAKTAFTDVTGEGLGATGTSTKLSSDGGQLGQYGNFDSGVMNIPFVLGW PGTLLYMSGVIWLLMRALRASFRLRDDKFASASLSLALAIFAMLVFTNSLVGTGGLLLFMGVFSILSAAHYQKLNGRRQS FFHGGR >Mature_485_residues SSIARAGIEGTSRAVRRERRDWLPPALLWLVTAMLIVAHQGTVLTLAFPVLSIAVGFWLYFKAPAKYVGYMWWLWFLSPE VRRLADWSKGAFTPTSLIQVAPLAVTMISGLSLIRFYPMLAQRRGLPVLLVLGGLAYAFVIGVVSAGPLAALYDLANWVY PLLIGFHIMAHSRQYPVFRETIVNTFIWGMLLMGGYGLVQFFIMPQWDALWMLGSQMNSQGDPVPFGVRVFSTMNSSGPF ALAMMGAMVYVMAANHRVRWLAGAFGFLSFCLSLVRSTWGGWVIAMLIQLVKSDNKVRMRIVASAVLLTGLCVPLLAVGP VAERMQARLDTIVNLHDDQSYAARNEFYATFAKTAFTDVTGEGLGATGTSTKLSSDGGQLGQYGNFDSGVMNIPFVLGWP GTLLYMSGVIWLLMRALRASFRLRDDKFASASLSLALAIFAMLVFTNSLVGTGGLLLFMGVFSILSAAHYQKLNGRRQSF FHGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53443; Mature: 53312
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIARAGIEGTSRAVRRERRDWLPPALLWLVTAMLIVAHQGTVLTLAFPVLSIAVGFWL CCCHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YFKAPAKYVGYMWWLWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMISGLSLIRFYPM HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LAQRRGLPVLLVLGGLAYAFVIGVVSAGPLAALYDLANWVYPLLIGFHIMAHSRQYPVFR HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ETIVNTFIWGMLLMGGYGLVQFFIMPQWDALWMLGSQMNSQGDPVPFGVRVFSTMNSSGP HHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC FALAMMGAMVYVMAANHRVRWLAGAFGFLSFCLSLVRSTWGGWVIAMLIQLVKSDNKVRM HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RIVASAVLLTGLCVPLLAVGPVAERMQARLDTIVNLHDDQSYAARNEFYATFAKTAFTDV HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC TGEGLGATGTSTKLSSDGGQLGQYGNFDSGVMNIPFVLGWPGTLLYMSGVIWLLMRALRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCCHHHHHHHHHHHHHHHHHHH SFRLRDDKFASASLSLALAIFAMLVFTNSLVGTGGLLLFMGVFSILSAAHYQKLNGRRQS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHH FFHGGR HCCCCC >Mature Secondary Structure SSIARAGIEGTSRAVRRERRDWLPPALLWLVTAMLIVAHQGTVLTLAFPVLSIAVGFWL CCHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH YFKAPAKYVGYMWWLWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMISGLSLIRFYPM HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LAQRRGLPVLLVLGGLAYAFVIGVVSAGPLAALYDLANWVYPLLIGFHIMAHSRQYPVFR HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ETIVNTFIWGMLLMGGYGLVQFFIMPQWDALWMLGSQMNSQGDPVPFGVRVFSTMNSSGP HHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC FALAMMGAMVYVMAANHRVRWLAGAFGFLSFCLSLVRSTWGGWVIAMLIQLVKSDNKVRM HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RIVASAVLLTGLCVPLLAVGPVAERMQARLDTIVNLHDDQSYAARNEFYATFAKTAFTDV HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC TGEGLGATGTSTKLSSDGGQLGQYGNFDSGVMNIPFVLGWPGTLLYMSGVIWLLMRALRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCCHHHHHHHHHHHHHHHHHHH SFRLRDDKFASASLSLALAIFAMLVFTNSLVGTGGLLLFMGVFSILSAAHYQKLNGRRQS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHH FFHGGR HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA