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The map label for this gene is bphB [H]

Identifier: 186475755

GI number: 186475755

Start: 1108222

End: 1109865

Strand: Direct

Name: bphB [H]

Synonym: Bphy_0990

Alternate gene names: 186475755

Gene position: 1108222-1109865 (Clockwise)

Preceding gene: 186475753

Following gene: 186475756

Centisome position: 31.85

GC content: 66.67

Gene sequence:

>1644_bases
ATGGACGTTCGTGCCGCACCGCGCCAGGCATCCATGAAACTGTTCACCAAAGGTCTACTGCTGATTGCGTTGCCGAGCGC
CATCGAACTGGCGTTGCTCGGCGTCGTCTTCGACATGCAGACGAAAACGGCGGCCGCTGTCGAGCGTTCGTCGGACAGCA
GGCAGATCCTGTATCAGGCTGCTGCGCTCGAAAACCCGGTGCTGCGGCAGGTTGCGCGTGTGCGCGCGGGGATCGTGGCA
GGCGACGTGGCACTCATGGAACGTCATGCTGCGTGGGTCGATATCGGCGACCGGCTCGCGCGTCTCGAGCAGGCGGTCGC
CGACACACCCGATCAGGCGTCGCGTGTGCAGCGCATGCGGGAGGCCGTCGACAGCTACCGGCAGCAGGCGCTGTCCGTCG
CGCAGTCGCTGCGCACGGGTGCGACGATGAAGCCGTTCGTCACGCTTGAAGGCGGCGAGTTGCCCGCGCAGGTGGTGGCG
TTTCGCGAGCAGTTGCATGGTTTCATCGACGAAGCATCGCGGCTCGAAGGCGAGCGCAACGCGACACTCGCCCGCACCCG
CCAGCGTCAGCAATATTCGCTGGTGGGTGCCGTGATCGGCTCGATGCTGCTGTGGACAGGTACCGCGTTTGCGTTTGCGC
GCGGCATCGGCAGGCGGCTCGACGTGCTGGCGGACAATGCGCAGCGGCTCGCCGACGGGCAGCCGCTGCCCGCGCCGCTG
GCGGGCAACGATGAAATCGCGGCGCTCGACGCCGCGCTGCATCGCACGAGCGGGCAGTTGCGCATCGCGGAACAGAATCA
GGGCGCACTCAAGGTCTCGCTGCAGGCGCGCACGGCGGAACTCGCGAGCGTCAACGAGACGCTGCGTCAGGAGACGCAGG
ACAACGAGATGTTTGTCTACAGCGTGTCGCACGATCTGCGTTCGCCGCTTGTCAACATGCAGGGCTTCTCGAAGGAACTT
CAGGTTTCGTGCGACGAGCTGCGCGCGACGGTCGTCGCGGCGGGCCTGCCCGCCGACGAATACGAGCGGCTCGCGCATGT
GCTGGACGGCGACGTGCAGGAATCGCTGCGCTTCGTGCGCTCGTCGGTGACGCGCGCAGCGGCCATCATCGAAGCGCTGT
TGCGCATTTCGCGTGCGGGCCGGCTCGATTATCAGTGGCAGCGTGTGAACGTCGGGCGCGCGGTCGCCCGCGTCGTCGAT
GCGCTGCAGCCGCGCATCGACGAGCGTCATGCCATCGTCGTCGTCCACGCGCTGCCGACGGCATGGGGCGACCCGTCTGC
GATTGAGCAGGTGTTCAGCCAGCTGCTGTCGAATGCGGTCAACTTTCTCGATCCGTCGCGGCCGGGGCGCATCGAAATCG
GTGCGCTCGACGCGCAACAGGAAGACGGCGCGCACGACCCGGCGCCCCCCACGCGCACATACTTTGTGCGCGACAATGGA
CTGGGGATTCCCGCCGCGTATATGTCGAAAGTATTTCGTGCGTTCCAGCGGCTGCATGGCGATGTCGCGCACGGCGAGGG
CGTCGGCCTTGTGCTCGTGCGGCGCACCGTCGAACGTCATGGCGGGCGGGTGTGGGTCGAATCGACGGAAGGCGCGGGCT
CGACATTCTTCTTCACGCTGCCCGATCACCCGCTGCGCCACTGA

Upstream 100 bases:

>100_bases
TCGTTGTGGGGCGACGCTACGCGTGCGGCGCATAGCGATGATGCATGCGCACGACTCATCATTCGCGCGCCCATTCCACA
TGTCGGGAACGCGGCACGCA

Downstream 100 bases:

>100_bases
TCGTGAGCATCCGTGAAGCCGTGCGTCGCGGATGTGCAAACGTGCGAGATGCCGTCAGCCGACACCCCGCATAATATCGG
GCAGTGGGTCGTACCATTGG

Product: integral membrane sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MDVRAAPRQASMKLFTKGLLLIALPSAIELALLGVVFDMQTKTAAAVERSSDSRQILYQAAALENPVLRQVARVRAGIVA
GDVALMERHAAWVDIGDRLARLEQAVADTPDQASRVQRMREAVDSYRQQALSVAQSLRTGATMKPFVTLEGGELPAQVVA
FREQLHGFIDEASRLEGERNATLARTRQRQQYSLVGAVIGSMLLWTGTAFAFARGIGRRLDVLADNAQRLADGQPLPAPL
AGNDEIAALDAALHRTSGQLRIAEQNQGALKVSLQARTAELASVNETLRQETQDNEMFVYSVSHDLRSPLVNMQGFSKEL
QVSCDELRATVVAAGLPADEYERLAHVLDGDVQESLRFVRSSVTRAAAIIEALLRISRAGRLDYQWQRVNVGRAVARVVD
ALQPRIDERHAIVVVHALPTAWGDPSAIEQVFSQLLSNAVNFLDPSRPGRIEIGALDAQQEDGAHDPAPPTRTYFVRDNG
LGIPAAYMSKVFRAFQRLHGDVAHGEGVGLVLVRRTVERHGGRVWVESTEGAGSTFFFTLPDHPLRH

Sequences:

>Translated_547_residues
MDVRAAPRQASMKLFTKGLLLIALPSAIELALLGVVFDMQTKTAAAVERSSDSRQILYQAAALENPVLRQVARVRAGIVA
GDVALMERHAAWVDIGDRLARLEQAVADTPDQASRVQRMREAVDSYRQQALSVAQSLRTGATMKPFVTLEGGELPAQVVA
FREQLHGFIDEASRLEGERNATLARTRQRQQYSLVGAVIGSMLLWTGTAFAFARGIGRRLDVLADNAQRLADGQPLPAPL
AGNDEIAALDAALHRTSGQLRIAEQNQGALKVSLQARTAELASVNETLRQETQDNEMFVYSVSHDLRSPLVNMQGFSKEL
QVSCDELRATVVAAGLPADEYERLAHVLDGDVQESLRFVRSSVTRAAAIIEALLRISRAGRLDYQWQRVNVGRAVARVVD
ALQPRIDERHAIVVVHALPTAWGDPSAIEQVFSQLLSNAVNFLDPSRPGRIEIGALDAQQEDGAHDPAPPTRTYFVRDNG
LGIPAAYMSKVFRAFQRLHGDVAHGEGVGLVLVRRTVERHGGRVWVESTEGAGSTFFFTLPDHPLRH
>Mature_547_residues
MDVRAAPRQASMKLFTKGLLLIALPSAIELALLGVVFDMQTKTAAAVERSSDSRQILYQAAALENPVLRQVARVRAGIVA
GDVALMERHAAWVDIGDRLARLEQAVADTPDQASRVQRMREAVDSYRQQALSVAQSLRTGATMKPFVTLEGGELPAQVVA
FREQLHGFIDEASRLEGERNATLARTRQRQQYSLVGAVIGSMLLWTGTAFAFARGIGRRLDVLADNAQRLADGQPLPAPL
AGNDEIAALDAALHRTSGQLRIAEQNQGALKVSLQARTAELASVNETLRQETQDNEMFVYSVSHDLRSPLVNMQGFSKEL
QVSCDELRATVVAAGLPADEYERLAHVLDGDVQESLRFVRSSVTRAAAIIEALLRISRAGRLDYQWQRVNVGRAVARVVD
ALQPRIDERHAIVVVHALPTAWGDPSAIEQVFSQLLSNAVNFLDPSRPGRIEIGALDAQQEDGAHDPAPPTRTYFVRDNG
LGIPAAYMSKVFRAFQRLHGDVAHGEGVGLVLVRRTVERHGGRVWVESTEGAGSTFFFTLPDHPLRH

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=315, Percent_Identity=24.1269841269841, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788549, Length=314, Percent_Identity=25.1592356687898, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 59817; Mature: 59817

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVRAAPRQASMKLFTKGLLLIALPSAIELALLGVVFDMQTKTAAAVERSSDSRQILYQA
CCCCCCCHHHHHHHHHHCHHEEECCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
AALENPVLRQVARVRAGIVAGDVALMERHAAWVDIGDRLARLEQAVADTPDQASRVQRMR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAVDSYRQQALSVAQSLRTGATMKPFVTLEGGELPAQVVAFREQLHGFIDEASRLEGERN
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
ATLARTRQRQQYSLVGAVIGSMLLWTGTAFAFARGIGRRLDVLADNAQRLADGQPLPAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGNDEIAALDAALHRTSGQLRIAEQNQGALKVSLQARTAELASVNETLRQETQDNEMFVY
CCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEE
SVSHDLRSPLVNMQGFSKELQVSCDELRATVVAAGLPADEYERLAHVLDGDVQESLRFVR
ECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH
SSVTRAAAIIEALLRISRAGRLDYQWQRVNVGRAVARVVDALQPRIDERHAIVVVHALPT
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
AWGDPSAIEQVFSQLLSNAVNFLDPSRPGRIEIGALDAQQEDGAHDPAPPTRTYFVRDNG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
LGIPAAYMSKVFRAFQRLHGDVAHGEGVGLVLVRRTVERHGGRVWVESTEGAGSTFFFTL
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEC
PDHPLRH
CCCCCCC
>Mature Secondary Structure
MDVRAAPRQASMKLFTKGLLLIALPSAIELALLGVVFDMQTKTAAAVERSSDSRQILYQA
CCCCCCCHHHHHHHHHHCHHEEECCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHH
AALENPVLRQVARVRAGIVAGDVALMERHAAWVDIGDRLARLEQAVADTPDQASRVQRMR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAVDSYRQQALSVAQSLRTGATMKPFVTLEGGELPAQVVAFREQLHGFIDEASRLEGERN
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
ATLARTRQRQQYSLVGAVIGSMLLWTGTAFAFARGIGRRLDVLADNAQRLADGQPLPAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGNDEIAALDAALHRTSGQLRIAEQNQGALKVSLQARTAELASVNETLRQETQDNEMFVY
CCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEE
SVSHDLRSPLVNMQGFSKELQVSCDELRATVVAAGLPADEYERLAHVLDGDVQESLRFVR
ECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHH
SSVTRAAAIIEALLRISRAGRLDYQWQRVNVGRAVARVVDALQPRIDERHAIVVVHALPT
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
AWGDPSAIEQVFSQLLSNAVNFLDPSRPGRIEIGALDAQQEDGAHDPAPPTRTYFVRDNG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
LGIPAAYMSKVFRAFQRLHGDVAHGEGVGLVLVRRTVERHGGRVWVESTEGAGSTFFFTL
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEEC
PDHPLRH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]