| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yhjG [H]
Identifier: 186475753
GI number: 186475753
Start: 1104678
End: 1107110
Strand: Direct
Name: yhjG [H]
Synonym: Bphy_0988
Alternate gene names: 186475753
Gene position: 1104678-1107110 (Clockwise)
Preceding gene: 186475750
Following gene: 186475755
Centisome position: 31.75
GC content: 64.61
Gene sequence:
>2433_bases ATGACGATCGGCAAGACGATAGGTAAGACGCTCGCATGGCTCATCGCCGCGTTGCTGATACTGATCGCGGTCCTCGTGAT CTTCATTCTCACCTTCGACTGGAATCGCGCGCGGCCCTATGTGAACGAGAAGGTTAGCGAAGCGATCGGCCGGCCCTTCG CGATCGAAGGCGATCTGAAAGTCGGTTGGCGCCATCCCGTCGGCGAAACGGGCTGGCGCGCCTGGGTCCTGTGGCCGCGC TTTTCCGCGCAGAACATCACGATCGCCAATCCCGACTGGACGCGCCAGAAACACTTTGCGACGCTCGACGAGATCGACTT CCAGGTCAAGGTGCTGCCGCTGCTCGCGCACGACATCGTGATTCCCGCGATCAATCTGGTGAACCCCTCAGTCGATCTCG AGCGGCTGCTCGACGGACGCAACAACTGGACCTTCAAGCTGAAGTCGTCCGCCCAGCCGTCCGAGTGGAAGCTCGATCTG CACGACATCCAGTTGAACAAGGGCATGATTGCACTCTCGGATCAGCAGAAGAAGATCGACATGCAGGCGGTCGTCGATAC GCTGGGTCAGCCGATACCCATCGGCGAAGCGCTGAAGCAGCAGCAAGAGGCGTCGCGCAAATCGTCGGCCGAAGTCGTCG GGCAACGGGGCGCAAAGCAACTGACCGCGCAGGCGAAGGCGGCATCCGGGGCATCGGCCGCGTCCGCGGTGGCGCCGGGT GCGCCCGCGTCGGGCGCGTCAACAACGGCATCCGAAGCGGCCGCCACGGCAGGCGCTGGCGCGTCGCCGGCCGTGCCTGC GAGTTCAACAGGCGCATCCGCGGGCACGGCTGTCGCGCCGCGGCAGACCGCGCCGCAGTACGGCATAGGCTGGACGGTGA AGGGTACCTACAACCGCTCGACCGTCTCGGGCAGCGGCAAGCTGGGCGGCGTGCTCGCGCTGCAGGACAGGTCGCGGCCT TTCCCCGTGCAGGCGGACGTGAAGGCGGGCGACTTGCGTATCGCGCTCGTCGGCACCGTCACCGATCCCGCCCATCTCGC CGCCGTGGACTTGCGGCTCTGGCTGCAGGGGACGAGCCTCGATCATCTCTACGATCTCACGGGCATCACGCTGCCGGAGA CGCCACCGTACGCGACGGAAGGCCATCTGATCGGCACTTTCAAGCAGGGCGCGAGCGTGTTCCGGTATGAAAATTTTACA GGGCGGGTTGGCGGCAGCGATCTGAACGGAACACTCGTGTATACGCAGCGCCCGACGCGCCCGTTGCTCGAAGGGACGCT TGTCTCAAACTTGCTGCAGTTCAAGGATCTCGCGCCAGTCATCGGCGCGGACAGCAACGCGAGCAAGAAAAAGCGCGGCG ACACCGCGCGCCAGCCATCGAACAAGGCGCTGCCGACGGAGCAGTTCAAGACCGACCGCTGGAAGGCAATCGACGCGAAC GTGAAGTTCACGGGCCGTCGCATCATCAAGGATCCGGCGCTGCCCATCACGGATCTGTACACGCACCTCGTGATGACGGA TGGTGTGTTGTCGATGGAGCCGCTGAAATTCGGCGTCGCGGGCGGCTCGCTCGCATCGGATATCCATCTCGACGGCAGTA CGACGCCGCTCAAAGGCCGTTTCTCGACGCAGGCGCGCCATCTGAAACTCAAGCAGCTGTTGCCGACGGCGAAGACGATG CAGAGCGCGCTCGGCGAAATCAACGGCGATGCGGAGCTGTCCGCGACGGGCAATTCGCCCGCGGCGCTCGCGAGCACGTC GAACGGCGAAGTGAAGATGCTCGTCACGGATGGCACCATCAGTCTGCTGCTGATGGAAGCGGCGGGGCTGAATGTCGCGA ACGTCGTCTACGAAAAGCTGTTCGGGGATCACGACGTGCAGATCAATTGCGCGGCCGCGGACTTCGTCGTGACGGACGGC GTGCTCGATTCGCGCGTGTTCGCGCTCGATACGCAGGACGCCGTGATCAATGTCGACGGCAAAGTGAACATGAAGGACGA GTCGATGGATCTCGGCGTGCATCCGCATACGAAGGGCTTCCGCGTTTTCACGCTGCGCTCGCCTCTCTACGTGAAAGGCA CGTTCAAGGATCCGCACGTCGGCGTCAATGCGGCGGCGCTCGCGGTGCGCGGCGGCGCAATGATCGGCCTCGGTCTGATC AATCCGTTCGCTGCGCTGATCCCGCTGATTGCGCCGAGCAACAACAAGCCGCTGCCATGTCAGCAACTGATGACGGCGAT GCAGGCCGAGCATCCGACCGCCCCGCCGCCGGGACAGCGCGAGAAAGGCGGCAAGGGCGTGAAGCTGCCCGCCGGAACGC CGGGCGCATCGGACGCGGCGCCGGCTTCCGCGCCGTCGAAGAAGCCGGCTGCGCCCGTCAATGGCGCGTCCTTGCCGGGA CCCGCACACGCAGCGGATTACAAGGGAAGCTGA
Upstream 100 bases:
>100_bases ATCATGATAACGAAGCGGACACGCGGGCACAGCACGTGCTGCGAAGTCGAATGACGAGGCATTCTCGGGAGCCCTCATGG CTGTGCTGCATTCGGCCCGC
Downstream 100 bases:
>100_bases TTAACGCGAGCGTTGTCCGCTCCGACCAGACGCTCCGACCAGACGCTCCGACCAGAACCGCCCGCAAAAGCGCCACGGCC GCGAATCTCGCGGCCGTGGC
Product: AsmA family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 809
Protein sequence:
>810_residues MTIGKTIGKTLAWLIAALLILIAVLVIFILTFDWNRARPYVNEKVSEAIGRPFAIEGDLKVGWRHPVGETGWRAWVLWPR FSAQNITIANPDWTRQKHFATLDEIDFQVKVLPLLAHDIVIPAINLVNPSVDLERLLDGRNNWTFKLKSSAQPSEWKLDL HDIQLNKGMIALSDQQKKIDMQAVVDTLGQPIPIGEALKQQQEASRKSSAEVVGQRGAKQLTAQAKAASGASAASAVAPG APASGASTTASEAAATAGAGASPAVPASSTGASAGTAVAPRQTAPQYGIGWTVKGTYNRSTVSGSGKLGGVLALQDRSRP FPVQADVKAGDLRIALVGTVTDPAHLAAVDLRLWLQGTSLDHLYDLTGITLPETPPYATEGHLIGTFKQGASVFRYENFT GRVGGSDLNGTLVYTQRPTRPLLEGTLVSNLLQFKDLAPVIGADSNASKKKRGDTARQPSNKALPTEQFKTDRWKAIDAN VKFTGRRIIKDPALPITDLYTHLVMTDGVLSMEPLKFGVAGGSLASDIHLDGSTTPLKGRFSTQARHLKLKQLLPTAKTM QSALGEINGDAELSATGNSPAALASTSNGEVKMLVTDGTISLLLMEAAGLNVANVVYEKLFGDHDVQINCAAADFVVTDG VLDSRVFALDTQDAVINVDGKVNMKDESMDLGVHPHTKGFRVFTLRSPLYVKGTFKDPHVGVNAAALAVRGGAMIGLGLI NPFAALIPLIAPSNNKPLPCQQLMTAMQAEHPTAPPPGQREKGGKGVKLPAGTPGASDAAPASAPSKKPAAPVNGASLPG PAHAADYKGS
Sequences:
>Translated_810_residues MTIGKTIGKTLAWLIAALLILIAVLVIFILTFDWNRARPYVNEKVSEAIGRPFAIEGDLKVGWRHPVGETGWRAWVLWPR FSAQNITIANPDWTRQKHFATLDEIDFQVKVLPLLAHDIVIPAINLVNPSVDLERLLDGRNNWTFKLKSSAQPSEWKLDL HDIQLNKGMIALSDQQKKIDMQAVVDTLGQPIPIGEALKQQQEASRKSSAEVVGQRGAKQLTAQAKAASGASAASAVAPG APASGASTTASEAAATAGAGASPAVPASSTGASAGTAVAPRQTAPQYGIGWTVKGTYNRSTVSGSGKLGGVLALQDRSRP FPVQADVKAGDLRIALVGTVTDPAHLAAVDLRLWLQGTSLDHLYDLTGITLPETPPYATEGHLIGTFKQGASVFRYENFT GRVGGSDLNGTLVYTQRPTRPLLEGTLVSNLLQFKDLAPVIGADSNASKKKRGDTARQPSNKALPTEQFKTDRWKAIDAN VKFTGRRIIKDPALPITDLYTHLVMTDGVLSMEPLKFGVAGGSLASDIHLDGSTTPLKGRFSTQARHLKLKQLLPTAKTM QSALGEINGDAELSATGNSPAALASTSNGEVKMLVTDGTISLLLMEAAGLNVANVVYEKLFGDHDVQINCAAADFVVTDG VLDSRVFALDTQDAVINVDGKVNMKDESMDLGVHPHTKGFRVFTLRSPLYVKGTFKDPHVGVNAAALAVRGGAMIGLGLI NPFAALIPLIAPSNNKPLPCQQLMTAMQAEHPTAPPPGQREKGGKGVKLPAGTPGASDAAPASAPSKKPAAPVNGASLPG PAHAADYKGS >Mature_809_residues TIGKTIGKTLAWLIAALLILIAVLVIFILTFDWNRARPYVNEKVSEAIGRPFAIEGDLKVGWRHPVGETGWRAWVLWPRF SAQNITIANPDWTRQKHFATLDEIDFQVKVLPLLAHDIVIPAINLVNPSVDLERLLDGRNNWTFKLKSSAQPSEWKLDLH DIQLNKGMIALSDQQKKIDMQAVVDTLGQPIPIGEALKQQQEASRKSSAEVVGQRGAKQLTAQAKAASGASAASAVAPGA PASGASTTASEAAATAGAGASPAVPASSTGASAGTAVAPRQTAPQYGIGWTVKGTYNRSTVSGSGKLGGVLALQDRSRPF PVQADVKAGDLRIALVGTVTDPAHLAAVDLRLWLQGTSLDHLYDLTGITLPETPPYATEGHLIGTFKQGASVFRYENFTG RVGGSDLNGTLVYTQRPTRPLLEGTLVSNLLQFKDLAPVIGADSNASKKKRGDTARQPSNKALPTEQFKTDRWKAIDANV KFTGRRIIKDPALPITDLYTHLVMTDGVLSMEPLKFGVAGGSLASDIHLDGSTTPLKGRFSTQARHLKLKQLLPTAKTMQ SALGEINGDAELSATGNSPAALASTSNGEVKMLVTDGTISLLLMEAAGLNVANVVYEKLFGDHDVQINCAAADFVVTDGV LDSRVFALDTQDAVINVDGKVNMKDESMDLGVHPHTKGFRVFTLRSPLYVKGTFKDPHVGVNAAALAVRGGAMIGLGLIN PFAALIPLIAPSNNKPLPCQQLMTAMQAEHPTAPPPGQREKGGKGVKLPAGTPGASDAAPASAPSKKPAAPVNGASLPGP AHAADYKGS
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=756, Percent_Identity=38.8888888888889, Blast_Score=510, Evalue=1e-145,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 85438; Mature: 85307
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGKTIGKTLAWLIAALLILIAVLVIFILTFDWNRARPYVNEKVSEAIGRPFAIEGDLK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCEE VGWRHPVGETGWRAWVLWPRFSAQNITIANPDWTRQKHFATLDEIDFQVKVLPLLAHDIV ECCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHCCCHHHCCEEEEEEHHHHHHHH IPAINLVNPSVDLERLLDGRNNWTFKLKSSAQPSEWKLDLHDIQLNKGMIALSDQQKKID HHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEEECCCEEEECCCCHHHH MQAVVDTLGQPIPIGEALKQQQEASRKSSAEVVGQRGAKQLTAQAKAASGASAASAVAPG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHCCCC APASGASTTASEAAATAGAGASPAVPASSTGASAGTAVAPRQTAPQYGIGWTVKGTYNRS CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC TVSGSGKLGGVLALQDRSRPFPVQADVKAGDLRIALVGTVTDPAHLAAVDLRLWLQGTSL EECCCCCCCCEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCHHHEEEEEEEEEECCCH DHLYDLTGITLPETPPYATEGHLIGTFKQGASVFRYENFTGRVGGSDLNGTLVYTQRPTR HHHHHCCCCCCCCCCCCCCCCCEEEEHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC PLLEGTLVSNLLQFKDLAPVIGADSNASKKKRGDTARQPSNKALPTEQFKTDRWKAIDAN HHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCEEEEECC VKFTGRRIIKDPALPITDLYTHLVMTDGVLSMEPLKFGVAGGSLASDIHLDGSTTPLKGR EEECCCEEECCCCCCHHHHHHHHHHCCCCCEECCEEEEECCCCCCCEEEECCCCCCCCCC FSTQARHLKLKQLLPTAKTMQSALGEINGDAELSATGNSPAALASTSNGEVKMLVTDGTI CCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCE SLLLMEAAGLNVANVVYEKLFGDHDVQINCAAADFVVTDGVLDSRVFALDTQDAVINVDG EEEEEHHCCCCHHHHHHHHHCCCCCCEEEEEEECEEEECCCCCCEEEEEECCCEEEECCC KVNMKDESMDLGVHPHTKGFRVFTLRSPLYVKGTFKDPHVGVNAAALAVRGGAMIGLGLI EEEECCCCEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCEEEHHHH NPFAALIPLIAPSNNKPLPCQQLMTAMQAEHPTAPPPGQREKGGKGVKLPAGTPGASDAA HHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC PASAPSKKPAAPVNGASLPGPAHAADYKGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TIGKTIGKTLAWLIAALLILIAVLVIFILTFDWNRARPYVNEKVSEAIGRPFAIEGDLK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCEE VGWRHPVGETGWRAWVLWPRFSAQNITIANPDWTRQKHFATLDEIDFQVKVLPLLAHDIV ECCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHCCCHHHCCEEEEEEHHHHHHHH IPAINLVNPSVDLERLLDGRNNWTFKLKSSAQPSEWKLDLHDIQLNKGMIALSDQQKKID HHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEEECCCEEEECCCCHHHH MQAVVDTLGQPIPIGEALKQQQEASRKSSAEVVGQRGAKQLTAQAKAASGASAASAVAPG HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHCCCC APASGASTTASEAAATAGAGASPAVPASSTGASAGTAVAPRQTAPQYGIGWTVKGTYNRS CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC TVSGSGKLGGVLALQDRSRPFPVQADVKAGDLRIALVGTVTDPAHLAAVDLRLWLQGTSL EECCCCCCCCEEEECCCCCCCCEEECCCCCCEEEEEEEECCCCHHHEEEEEEEEEECCCH DHLYDLTGITLPETPPYATEGHLIGTFKQGASVFRYENFTGRVGGSDLNGTLVYTQRPTR HHHHHCCCCCCCCCCCCCCCCCEEEEHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC PLLEGTLVSNLLQFKDLAPVIGADSNASKKKRGDTARQPSNKALPTEQFKTDRWKAIDAN HHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCEEEEECC VKFTGRRIIKDPALPITDLYTHLVMTDGVLSMEPLKFGVAGGSLASDIHLDGSTTPLKGR EEECCCEEECCCCCCHHHHHHHHHHCCCCCEECCEEEEECCCCCCCEEEECCCCCCCCCC FSTQARHLKLKQLLPTAKTMQSALGEINGDAELSATGNSPAALASTSNGEVKMLVTDGTI CCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCE SLLLMEAAGLNVANVVYEKLFGDHDVQINCAAADFVVTDGVLDSRVFALDTQDAVINVDG EEEEEHHCCCCHHHHHHHHHCCCCCCEEEEEEECEEEECCCCCCEEEEEECCCEEEECCC KVNMKDESMDLGVHPHTKGFRVFTLRSPLYVKGTFKDPHVGVNAAALAVRGGAMIGLGLI EEEECCCCEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCEEEHHHH NPFAALIPLIAPSNNKPLPCQQLMTAMQAEHPTAPPPGQREKGGKGVKLPAGTPGASDAA HHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC PASAPSKKPAAPVNGASLPGPAHAADYKGS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]