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The map label for this gene is nlpD [C]

Identifier: 186475726

GI number: 186475726

Start: 1073191

End: 1074129

Strand: Direct

Name: nlpD [C]

Synonym: Bphy_0961

Alternate gene names: 186475726

Gene position: 1073191-1074129 (Clockwise)

Preceding gene: 186475725

Following gene: 186475727

Centisome position: 30.85

GC content: 63.58

Gene sequence:

>939_bases
ATGAGTATGTTTCGCGCGATGCAAAGAACCAGCCTGAATGTCCCGTTGTCCGTCGCTCAGCGCAGCGTTTGCGTGGCCAT
GCTGTCCGTCCTGGCCGCATGTGCGACGCGGCTCGATCAGGCGCCAGTGGTCGATCGCTCCGGCACCCTTGGCACCGTCA
CGCAGCCCGGTGCAGCGCCCACTGCGCAGGCGCCCGTGCCGCTCGGCCCGCCGCCTCCGGGCTACTACCGAGTGAAGCCG
GGCGACACCTTGTATAGGATCGCGCTCGAAAACGGTCAAAACTATCGCGACATTGCCGCGTGGAACAACCTGACCAACCC
GAACCAGATCGAAGTCGACCAGTTGCTGCGCGTGGCCCCGCCGGGCGCGAACGGCGCACCGATGGTGCCGGGCGTCGCGA
CCGCGCCGATCGGCGGTGGTGCAGTGCAGAGCGCGCCGCTCAACGGCGCATCCGCCGCACCGCCGGCGGGCGCCGCCAAT
CAGCCGCCCATTTACAGTGCGGCGCCGGGCGCGTCGGCTGCGCCCGCGGTGACGCCGCCGTCCGCTACCAGCGACACGAC
GGCGTCGAATGGCAACGTGTCGTTCGCATGGCCTGTGCGCGGTCCGCTGCTCAACGGCTTTGACGATTCGAAGAACAAAG
GCGTGAACATCGGCGGGTCGGCTGGTGAACCGGTAAAGGCTTCCGCTGATGGTCGAGTGGTTTATGCAGGAAATGGGCTG
CGCGGTTACGGCAATCTCATTATCATCAAGCATGACGCAACGTATCTCACAGCGTATGCACATAACCGCGCTTTGATGGT
AAAAGAGGGTGACGCGGTGACCAAGGGGCAGAAAATTGCCGAAATGGGCAACAGTGATTCGGACCGCGTGATGTTGCATT
TCGAAGTTCGCCGCCAGGGTAAGCCTGTCGACCCAATGAAGTATTTGCCGCCGCAATAA

Upstream 100 bases:

>100_bases
TGCTCACGCTCGTCGAGCGCACGGGGCCCGCGCAGTGGCGCGAATCGCGGCTTGATCGCGTTTTCTTTGTCCCCTTAAAA
TCCGGAGTGATTTGAACCCG

Downstream 100 bases:

>100_bases
GCCAAGCGATACGACCATGCCGAAATCGAAGCGCCGCCCATCGCAAGCAGAGACTGAGTCCCTCAGCCGTGCCACGCCTG
TTTCGGTGGACGACGCCGGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSMFRAMQRTSLNVPLSVAQRSVCVAMLSVLAACATRLDQAPVVDRSGTLGTVTQPGAAPTAQAPVPLGPPPPGYYRVKP
GDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVAPPGANGAPMVPGVATAPIGGGAVQSAPLNGASAAPPAGAAN
QPPIYSAAPGASAAPAVTPPSATSDTTASNGNVSFAWPVRGPLLNGFDDSKNKGVNIGGSAGEPVKASADGRVVYAGNGL
RGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPMKYLPPQ

Sequences:

>Translated_312_residues
MSMFRAMQRTSLNVPLSVAQRSVCVAMLSVLAACATRLDQAPVVDRSGTLGTVTQPGAAPTAQAPVPLGPPPPGYYRVKP
GDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVAPPGANGAPMVPGVATAPIGGGAVQSAPLNGASAAPPAGAAN
QPPIYSAAPGASAAPAVTPPSATSDTTASNGNVSFAWPVRGPLLNGFDDSKNKGVNIGGSAGEPVKASADGRVVYAGNGL
RGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPMKYLPPQ
>Mature_311_residues
SMFRAMQRTSLNVPLSVAQRSVCVAMLSVLAACATRLDQAPVVDRSGTLGTVTQPGAAPTAQAPVPLGPPPPGYYRVKPG
DTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVAPPGANGAPMVPGVATAPIGGGAVQSAPLNGASAAPPAGAANQ
PPIYSAAPGASAAPAVTPPSATSDTTASNGNVSFAWPVRGPLLNGFDDSKNKGVNIGGSAGEPVKASADGRVVYAGNGLR
GYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQGKPVDPMKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=271, Percent_Identity=39.1143911439114, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI87082174, Length=239, Percent_Identity=37.6569037656904, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=41.1764705882353, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32167; Mature: 32036

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMFRAMQRTSLNVPLSVAQRSVCVAMLSVLAACATRLDQAPVVDRSGTLGTVTQPGAAP
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TAQAPVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVAP
CCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEHHHHHCCCCCCCEECHHHHHEECC
PGANGAPMVPGVATAPIGGGAVQSAPLNGASAAPPAGAANQPPIYSAAPGASAAPAVTPP
CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
SATSDTTASNGNVSFAWPVRGPLLNGFDDSKNKGVNIGGSAGEPVKASADGRVVYAGNGL
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEECCCC
RGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQG
CCCCCEEEEEECCEEEEEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCC
KPVDPMKYLPPQ
CCCCCCCCCCCC
>Mature Secondary Structure 
SMFRAMQRTSLNVPLSVAQRSVCVAMLSVLAACATRLDQAPVVDRSGTLGTVTQPGAAP
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TAQAPVPLGPPPPGYYRVKPGDTLYRIALENGQNYRDIAAWNNLTNPNQIEVDQLLRVAP
CCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEHHHHHCCCCCCCEECHHHHHEECC
PGANGAPMVPGVATAPIGGGAVQSAPLNGASAAPPAGAANQPPIYSAAPGASAAPAVTPP
CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
SATSDTTASNGNVSFAWPVRGPLLNGFDDSKNKGVNIGGSAGEPVKASADGRVVYAGNGL
CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCEEEEECCCC
RGYGNLIIIKHDATYLTAYAHNRALMVKEGDAVTKGQKIAEMGNSDSDRVMLHFEVRRQG
CCCCCEEEEEECCEEEEEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEECCC
KPVDPMKYLPPQ
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]