| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475711
Identifier: 186475711
GI number: 186475711
Start: 1056378
End: 1058135
Strand: Reverse
Name: 186475711
Synonym: Bphy_0946
Alternate gene names: NA
Gene position: 1058135-1056378 (Counterclockwise)
Preceding gene: 186475712
Following gene: 186475710
Centisome position: 30.41
GC content: 65.81
Gene sequence:
>1758_bases ATGAGATCTGTCGTTCGCCTCACAGCCTCCGCCACCAGTGCGCTGCCGCGCTGGATGCTGCTTACCATCTGCGTCGTGTA CGCGTCGTTCGGCCTGTTCGGACGCGACCCGTGGAAGAACGAAGACGCAGCCGGCTTCGGCGTCATGTGGACGATGGCCA ACGGTTCGCTGCACGACTGGCTGCTGCCGAATCTGGTCGGCAAGTACATGACGTCCGACGCGCCGCTCGGCTACTGGCTC GGCGCCGGCGCGATACGCGTGCTCGATCCGCTTGTGGACGCAAGCAATGCGTCGCGCGTATTCACGGGCTTGCTGTTCTG CGCGGCGTGCGCGTTCGTCTGGTATGCAGCCTACCTGCTAGGCCGCCGCCCGGAAGTGCAGCCCTTCAAGTACGCGTTCG GCGGCGAGCCCGAACCGCGCGACTACGGGCGCACGCTCGCCGACGGCGCGCTGCTGATCCTGCTGGCCACCTTTGGTCTC GCCGAGCGCGGCCACGAAACCACGCCGCAGATCACGCAGTTCGTCTGCATCGCGATGCTTGTCTACGGCCTCGTGCGGAC GATCGACAAGCCCGTCCAGGGTGCACTCATCTGGGGCTGCGCGATCGGCCTCGTGACGCTGACGAGCAGTCCCGTGCTGG TCGGCGCCCTGCTGATCGGCACCTTCGCGATGATGCTGATCGTGCACGACACGCACTGGCGCACCTTGATGCTCGCGGGC TTGCCCGTTGCGCTCGCGCTGTCGGTGGTGTGGCCGCTCACCGCGATCGCCCTGTTCCCTGACGATGCCGTCTGGTTCCT GCATCAATGGATGCGCGGCAGCCTGCACACGTTCCAGGGACCGTACGGATCGACGCTGCGCTACGCCGTCAAGAACCTGC CGCTCTTCACCTGGCCCGCATGGCCGCTCGCGATCTGGGCATGGTTCAGCTGGGCCGGCCTGCGCCGCGCGCCGCATGTG GCGATTCCGCTGTCCGTGATCGCGCCGCTGCTGGTTCTCGTCGTGCTGCAAAGCCAGGGCACGAACCGCCTCTATATGCT GCTGACGCCCGCGCTTGCCGTGATTGCCGCGTTCGCGCTGCCCACGCTCAAGCGCGGCGCGATCAACGCGATCGACTGGT TCGCGGTGCTGAGCTTCACGGTGCTCGGCACGTTCGTTTGGCTGGTGTGGCTCGCCGGCATGACGGGCTATCCGCATCAG CTCGCACGCAATCTCTCGCGTCTCGCGCCGGGCTTCACGCCGCAGTTCAAGATTCTGTCGTTCGTCTGTGCGGTCGCGGT GACCGTGTGCTGGTTTGCGCTCGTCCAGTGGCGCGTGGCGCGGCATCCGAAGGTGCTGTGGCGCAGCGTCGTGCTGTCGA GCGCGGGCACGACGCTGATGTGGGTGCTGCTGATGACACTGTGGCTGCCCGTCGTCAATTACAGCCGTACCTATAAGGAC GTCGCCCAGCAGATCGCCGCGCATCTGCCGTCCGACTACAATTGCATCTCCCCCGTGCGGCTCGGCGACGCACAGATCGC CACTTTCGCCTATTTCGGCGACATGCATTTTTCGTTCGATGACGACTGCGACGTGATCCTGCGTCAGGACACGCAGGACT TCGGCGAGCCGAGCGCGATGTCAAACTTCGTCTGGAAGCTCGTCTGGGAAGGCCGCCGTGTGGCCGACCGCGACGAACGT TTCCGCCTGTACGTGCGCATCGACCGTCCGCAACCGCCCGTCAAGCGCCGTCCGTGGCGTCCGAAGAAAAGCGGCTGA
Upstream 100 bases:
>100_bases CGCCGCCCGTCTACAATGCCGCATGCCCGAACATGCGACGCCTCCCGCGCTGCGCCAATAAATCACGGCTGCCGCCCTCG CAGCCCCATACGAACACCGC
Downstream 100 bases:
>100_bases GCATGTTTGACGATGTGCGGAAAATCGCCGGGCTCGCGTGGCCCGTGCTGATCGGCCAGCTGGCGATCATCGCGTTCGGC GTGATCGATACAGCGATGGT
Product: putative inner membrane protein
Products: NA
Alternate protein names: Transmembrane Protein; Inner Membrane Protein; Glycosyl Transferase Family Protein; Glycosyltransferase; 4-Amino-4-Deoxy-L-Arabinose Transferase; Glycosyl Transferase Family; PMT Family Glycosyltransferase; Glycosyltransferase Pmt Family
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MRSVVRLTASATSALPRWMLLTICVVYASFGLFGRDPWKNEDAAGFGVMWTMANGSLHDWLLPNLVGKYMTSDAPLGYWL GAGAIRVLDPLVDASNASRVFTGLLFCAACAFVWYAAYLLGRRPEVQPFKYAFGGEPEPRDYGRTLADGALLILLATFGL AERGHETTPQITQFVCIAMLVYGLVRTIDKPVQGALIWGCAIGLVTLTSSPVLVGALLIGTFAMMLIVHDTHWRTLMLAG LPVALALSVVWPLTAIALFPDDAVWFLHQWMRGSLHTFQGPYGSTLRYAVKNLPLFTWPAWPLAIWAWFSWAGLRRAPHV AIPLSVIAPLLVLVVLQSQGTNRLYMLLTPALAVIAAFALPTLKRGAINAIDWFAVLSFTVLGTFVWLVWLAGMTGYPHQ LARNLSRLAPGFTPQFKILSFVCAVAVTVCWFALVQWRVARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD VAQQIAAHLPSDYNCISPVRLGDAQIATFAYFGDMHFSFDDDCDVILRQDTQDFGEPSAMSNFVWKLVWEGRRVADRDER FRLYVRIDRPQPPVKRRPWRPKKSG
Sequences:
>Translated_585_residues MRSVVRLTASATSALPRWMLLTICVVYASFGLFGRDPWKNEDAAGFGVMWTMANGSLHDWLLPNLVGKYMTSDAPLGYWL GAGAIRVLDPLVDASNASRVFTGLLFCAACAFVWYAAYLLGRRPEVQPFKYAFGGEPEPRDYGRTLADGALLILLATFGL AERGHETTPQITQFVCIAMLVYGLVRTIDKPVQGALIWGCAIGLVTLTSSPVLVGALLIGTFAMMLIVHDTHWRTLMLAG LPVALALSVVWPLTAIALFPDDAVWFLHQWMRGSLHTFQGPYGSTLRYAVKNLPLFTWPAWPLAIWAWFSWAGLRRAPHV AIPLSVIAPLLVLVVLQSQGTNRLYMLLTPALAVIAAFALPTLKRGAINAIDWFAVLSFTVLGTFVWLVWLAGMTGYPHQ LARNLSRLAPGFTPQFKILSFVCAVAVTVCWFALVQWRVARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD VAQQIAAHLPSDYNCISPVRLGDAQIATFAYFGDMHFSFDDDCDVILRQDTQDFGEPSAMSNFVWKLVWEGRRVADRDER FRLYVRIDRPQPPVKRRPWRPKKSG >Mature_585_residues MRSVVRLTASATSALPRWMLLTICVVYASFGLFGRDPWKNEDAAGFGVMWTMANGSLHDWLLPNLVGKYMTSDAPLGYWL GAGAIRVLDPLVDASNASRVFTGLLFCAACAFVWYAAYLLGRRPEVQPFKYAFGGEPEPRDYGRTLADGALLILLATFGL AERGHETTPQITQFVCIAMLVYGLVRTIDKPVQGALIWGCAIGLVTLTSSPVLVGALLIGTFAMMLIVHDTHWRTLMLAG LPVALALSVVWPLTAIALFPDDAVWFLHQWMRGSLHTFQGPYGSTLRYAVKNLPLFTWPAWPLAIWAWFSWAGLRRAPHV AIPLSVIAPLLVLVVLQSQGTNRLYMLLTPALAVIAAFALPTLKRGAINAIDWFAVLSFTVLGTFVWLVWLAGMTGYPHQ LARNLSRLAPGFTPQFKILSFVCAVAVTVCWFALVQWRVARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD VAQQIAAHLPSDYNCISPVRLGDAQIATFAYFGDMHFSFDDDCDVILRQDTQDFGEPSAMSNFVWKLVWEGRRVADRDER FRLYVRIDRPQPPVKRRPWRPKKSG
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65293; Mature: 65293
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSVVRLTASATSALPRWMLLTICVVYASFGLFGRDPWKNEDAAGFGVMWTMANGSLHDW CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHH LLPNLVGKYMTSDAPLGYWLGAGAIRVLDPLVDASNASRVFTGLLFCAACAFVWYAAYLL HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GRRPEVQPFKYAFGGEPEPRDYGRTLADGALLILLATFGLAERGHETTPQITQFVCIAML CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VYGLVRTIDKPVQGALIWGCAIGLVTLTSSPVLVGALLIGTFAMMLIVHDTHWRTLMLAG HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC LPVALALSVVWPLTAIALFPDDAVWFLHQWMRGSLHTFQGPYGSTLRYAVKNLPLFTWPA CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEECCH WPLAIWAWFSWAGLRRAPHVAIPLSVIAPLLVLVVLQSQGTNRLYMLLTPALAVIAAFAL HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH PTLKRGAINAIDWFAVLSFTVLGTFVWLVWLAGMTGYPHQLARNLSRLAPGFTPQFKILS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHH FVCAVAVTVCWFALVQWRVARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHH VAQQIAAHLPSDYNCISPVRLGDAQIATFAYFGDMHFSFDDDCDVILRQDTQDFGEPSAM HHHHHHHHCCCCCCCCCCCCCCCCHHHHEEEECCEECCCCCCCCHHEECCCHHCCCCHHH SNFVWKLVWEGRRVADRDERFRLYVRIDRPQPPVKRRPWRPKKSG HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRSVVRLTASATSALPRWMLLTICVVYASFGLFGRDPWKNEDAAGFGVMWTMANGSLHDW CCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHH LLPNLVGKYMTSDAPLGYWLGAGAIRVLDPLVDASNASRVFTGLLFCAACAFVWYAAYLL HHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GRRPEVQPFKYAFGGEPEPRDYGRTLADGALLILLATFGLAERGHETTPQITQFVCIAML CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VYGLVRTIDKPVQGALIWGCAIGLVTLTSSPVLVGALLIGTFAMMLIVHDTHWRTLMLAG HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC LPVALALSVVWPLTAIALFPDDAVWFLHQWMRGSLHTFQGPYGSTLRYAVKNLPLFTWPA CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEECCH WPLAIWAWFSWAGLRRAPHVAIPLSVIAPLLVLVVLQSQGTNRLYMLLTPALAVIAAFAL HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH PTLKRGAINAIDWFAVLSFTVLGTFVWLVWLAGMTGYPHQLARNLSRLAPGFTPQFKILS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHH FVCAVAVTVCWFALVQWRVARHPKVLWRSVVLSSAGTTLMWVLLMTLWLPVVNYSRTYKD HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHH VAQQIAAHLPSDYNCISPVRLGDAQIATFAYFGDMHFSFDDDCDVILRQDTQDFGEPSAM HHHHHHHHCCCCCCCCCCCCCCCCHHHHEEEECCEECCCCCCCCHHEECCCHHCCCCHHH SNFVWKLVWEGRRVADRDERFRLYVRIDRPQPPVKRRPWRPKKSG HHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA