Click here to switch to the map view.

The map label for this gene is ybaV [C]

Identifier: 186475518

GI number: 186475518

Start: 849771

End: 850139

Strand: Direct

Name: ybaV [C]

Synonym: Bphy_0753

Alternate gene names: 186475518

Gene position: 849771-850139 (Clockwise)

Preceding gene: 186475517

Following gene: 186475519

Centisome position: 24.42

GC content: 64.77

Gene sequence:

>369_bases
ATGCTCAAAAAAATCTTCGTCACGGCGGCCATGCTCGCCGCTTTCGGCCAGGCGTTCGCCTCGGTCGACGTCAATTCCGC
TAACGAATCCGCGCTGCGCGGCATCAAGGGCATTGGCCCTGCGAAGGCGAAAGCCATTCTCGACGAACGCGCCGCTCACG
GTCCATTCAAGGACGCGGCAGATCTCAGCAAGCGGGTTAAGGGTCTCGGCGGCCATACGGTCGAACGTCTGCAGGCCGAG
GGGCTCGCTGTCGGCACATCGGGCGCTGGTGCGACGGCTGTCGCTGCTGCTGGCGCACAGGCTGCGGCGCCTCATGCGAA
AGCCGCGGCCGCTGCGAAGAGCGATACGGCCGTGGTGGTCAAGAAGTAG

Upstream 100 bases:

>100_bases
CGTTGGCTATCCGGCCAGGTGTAAATCGTTCGTACGCCTCTCTACACTGGGGTCTCCTGGTCGGTGATCGTCACTGGCCG
GTGTTTCAGGGAGATCCCAT

Downstream 100 bases:

>100_bases
CGCGCTGATCTGAGCGCCCGATGCGTGTCGGCTAGACGCGCAGGGGAGGCGCTCGCGTTAGGGTGTCATCGTTTCCATTG
AGCCGAGTTGCCCCAAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: ComEA-Related Signal Peptide Protein; Helix-Hairpin-Helix Motif Protein; DNA Uptake Protein ComEA-Like; Helix-Turn-Helix Protein; DNA Uptake Protein; ComE Protein

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MLKKIFVTAAMLAAFGQAFASVDVNSANESALRGIKGIGPAKAKAILDERAAHGPFKDAADLSKRVKGLGGHTVERLQAE
GLAVGTSGAGATAVAAAGAQAAAPHAKAAAAAKSDTAVVVKK

Sequences:

>Translated_122_residues
MLKKIFVTAAMLAAFGQAFASVDVNSANESALRGIKGIGPAKAKAILDERAAHGPFKDAADLSKRVKGLGGHTVERLQAE
GLAVGTSGAGATAVAAAGAQAAAPHAKAAAAAKSDTAVVVKK
>Mature_122_residues
MLKKIFVTAAMLAAFGQAFASVDVNSANESALRGIKGIGPAKAKAILDERAAHGPFKDAADLSKRVKGLGGHTVERLQAE
GLAVGTSGAGATAVAAAGAQAAAPHAKAAAAAKSDTAVVVKK

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11975; Mature: 11975

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIFVTAAMLAAFGQAFASVDVNSANESALRGIKGIGPAKAKAILDERAAHGPFKDAA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHH
DLSKRVKGLGGHTVERLQAEGLAVGTSGAGATAVAAAGAQAAAPHAKAAAAAKSDTAVVV
HHHHHHHCCCCHHHHHHHHCCEEEECCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
KK
EC
>Mature Secondary Structure
MLKKIFVTAAMLAAFGQAFASVDVNSANESALRGIKGIGPAKAKAILDERAAHGPFKDAA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHH
DLSKRVKGLGGHTVERLQAEGLAVGTSGAGATAVAAAGAQAAAPHAKAAAAAKSDTAVVV
HHHHHHHCCCCHHHHHHHHCCEEEECCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
KK
EC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA