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The map label for this gene is rarA [H]

Identifier: 186475407

GI number: 186475407

Start: 722871

End: 724232

Strand: Direct

Name: rarA [H]

Synonym: Bphy_0641

Alternate gene names: 186475407

Gene position: 722871-724232 (Clockwise)

Preceding gene: 186475405

Following gene: 186475408

Centisome position: 20.78

GC content: 66.01

Gene sequence:

>1362_bases
ATGCATCGTGACGGTTTATACCCGAAAAGCCGAGATTATCCCCAAAACGCCATGTTCGAAGAAACCCGCGCCAACGTCCC
TCTCGCCGAGCGCCTGCGGCCCCGCACCATCGACGAAGTCATCGGGCAGAAGCATCTGCTCGGCCCGAACAAGCCGCTGC
GGGTCGCGTTCGAGTCGGGCGAAGCGCATTCGATGATCCTCTGGGGCCCGCCCGGCGTCGGCAAGACCACGCTCGCGCGC
CTGATGGCCGACGCGTTCCACGCGCAGTTCATCGCGCTGTCGGCGGTGCTGTCGGGAGTAAAGGACATCCGCGAAGCCGT
CGAAACGGCGCAGATCCATCGCGCGAACGGCCACCAGACGCTCGTGTTCGTCGACGAAGTGCATCGCTTCAACAAGAGCC
AGCAAGACGCGTTCTTGCCGCACGTCGAGTCGGGCCTGTTCGTGTTCGTCGGCGCGACGACGGAAAACCCTTCGTTCGAG
GTGAACAGCGCGTTGTTGTCGCGGGCGTCCGTCTACGTGCTCAAGAGCCTCGACACTGACGAGCAGCGCGAACTGCTGGC
CCGCGCGCAGCAGGAACTCGGCGGCCTCACCCTCACAGACGAGGCGCGCGACGCACTGATCGGTTCCGCCGACGGAGACG
GCCGCAAGTTGCTGAACAACATGGAGATCGTCGCACGCGCGGCCGCCCGCCAGAAGAAGACGGAGATCGACGGCGAACTG
CTCGCGAGCGCGCTCTCCGAAAACCTGCGCCGCTTCGATAAGGGCGGCGACGCGTTCTACGACCAGATCAGCGCGCTCCA
CAAGTCGGTGCGGGGCAGCAACCCGGACGGCGCGCTGTACTGGTTGTGCAGGATGCTCGACGGCGGCGCGGATGCGCGTT
ATCTGTCGCGGCGTCTTGTGCGCATGGCGTGGGAAGACATCGGTCTCGCCGATCCGCGCGCTGCACGCATCGCGCTCGAC
GCCGCCGAAACCTACGAGCGCCTCGGCACGCCCGAAGGCGAACTGGCGCTTGCGCAGGCCGTGATTTATCTGGCCGTCGC
GCCGAAGTCGAATGCTGGCTACAACGCGTACAACGCGGCGCGCAGTTTCGTCGGCAAGGACCAGTCGCGCGCAGTGCCGA
TCCATCTGCGCAACGCGCCGACCAAGCTGATGAAGGAACTGGGCTACGGCCACGAGTATCGCTACGCGCACGACGAGCCG
GACGCGTACGCCGCGGGCGAAACCTATCTGCCCGACGGCATGCGCGAGCCGCGCTGGTATCAGCCGACGCCGCGCGGGCT
CGAGGGCAAGATCGGCGAGAAGCTCGCGCGCCTCGCCGACCTGGATGCGCAATGGCGCAGCGAGAACGGCAAGAAAAGCT
GA

Upstream 100 bases:

>100_bases
TAATGCGCAAGTCTGCATGCGCAGCCGCAGGCCGGATGACGGTTTCACGCGGATGCGCGCCGTTCCGGGGCAGGCCGTCG
CGCGCAAGGCGGTGCACGCT

Downstream 100 bases:

>100_bases
CGCGCTCGTCGCGCCTCACCCGACAATGCCGCCGGCCGGCCGCGGCGGTGCGTTAAAATCGCCCACTCAACCAACGAACT
GTCGCCCCCACTCATGCTTG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLAR
LMADAFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFE
VNSALLSRASVYVLKSLDTDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVARAAARQKKTEIDGEL
LASALSENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLVRMAWEDIGLADPRAARIALD
AAETYERLGTPEGELALAQAVIYLAVAPKSNAGYNAYNAARSFVGKDQSRAVPIHLRNAPTKLMKELGYGHEYRYAHDEP
DAYAAGETYLPDGMREPRWYQPTPRGLEGKIGEKLARLADLDAQWRSENGKKS

Sequences:

>Translated_453_residues
MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLAR
LMADAFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFE
VNSALLSRASVYVLKSLDTDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVARAAARQKKTEIDGEL
LASALSENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLVRMAWEDIGLADPRAARIALD
AAETYERLGTPEGELALAQAVIYLAVAPKSNAGYNAYNAARSFVGKDQSRAVPIHLRNAPTKLMKELGYGHEYRYAHDEP
DAYAAGETYLPDGMREPRWYQPTPRGLEGKIGEKLARLADLDAQWRSENGKKS
>Mature_453_residues
MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESGEAHSMILWGPPGVGKTTLAR
LMADAFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQTLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFE
VNSALLSRASVYVLKSLDTDEQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVARAAARQKKTEIDGEL
LASALSENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLVRMAWEDIGLADPRAARIALD
AAETYERLGTPEGELALAQAVIYLAVAPKSNAGYNAYNAARSFVGKDQSRAVPIHLRNAPTKLMKELGYGHEYRYAHDEP
DAYAAGETYLPDGMREPRWYQPTPRGLEGKIGEKLARLADLDAQWRSENGKKS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=453, Percent_Identity=41.280353200883, Blast_Score=323, Evalue=3e-88,
Organism=Homo sapiens, GI18426904, Length=453, Percent_Identity=37.5275938189845, Blast_Score=269, Evalue=5e-72,
Organism=Escherichia coli, GI1787119, Length=424, Percent_Identity=55.8962264150943, Blast_Score=457, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6324111, Length=450, Percent_Identity=37.3333333333333, Blast_Score=283, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50107; Mature: 50107

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESG
CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECC
EAHSMILWGPPGVGKTTLARLMADAFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQT
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRASVYVLKSLDTD
EEEHHHHHHCCCCCCHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
EQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVARAAARQKKTEIDGEL
HHHHHHHHHHHHHCCEEECCHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LASALSENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
RMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAVIYLAVAPKSNAGYNAYNAA
HHHHHHCCCCCCCHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHH
RSFVGKDQSRAVPIHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLPDGMREPRWY
HHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QPTPRGLEGKIGEKLARLADLDAQWRSENGKKS
CCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MHRDGLYPKSRDYPQNAMFEETRANVPLAERLRPRTIDEVIGQKHLLGPNKPLRVAFESG
CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCHHHHHCCHHCCCCCCCEEEEEECC
EAHSMILWGPPGVGKTTLARLMADAFHAQFIALSAVLSGVKDIREAVETAQIHRANGHQT
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRASVYVLKSLDTD
EEEHHHHHHCCCCCCHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH
EQRELLARAQQELGGLTLTDEARDALIGSADGDGRKLLNNMEIVARAAARQKKTEIDGEL
HHHHHHHHHHHHHCCEEECCHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
LASALSENLRRFDKGGDAFYDQISALHKSVRGSNPDGALYWLCRMLDGGADARYLSRRLV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
RMAWEDIGLADPRAARIALDAAETYERLGTPEGELALAQAVIYLAVAPKSNAGYNAYNAA
HHHHHHCCCCCCCHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHH
RSFVGKDQSRAVPIHLRNAPTKLMKELGYGHEYRYAHDEPDAYAAGETYLPDGMREPRWY
HHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QPTPRGLEGKIGEKLARLADLDAQWRSENGKKS
CCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]