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The map label for this gene is sodB [H]

Identifier: 186475308

GI number: 186475308

Start: 611889

End: 612467

Strand: Direct

Name: sodB [H]

Synonym: Bphy_0540

Alternate gene names: 186475308

Gene position: 611889-612467 (Clockwise)

Preceding gene: 186475307

Following gene: 186475311

Centisome position: 17.59

GC content: 57.86

Gene sequence:

>579_bases
ATGGAACATACGCTCCCGCCGCTGCCGTTCGCCAAGAACGCGCTCGCTCCGCACATGTCGGAAGAGACGCTCGAGTTTCA
CTACGGCAAGCACCACCAGACCTATGTGACCAACCTGAACAATCTGATCAAGGGCACCGAATTCGAAAGCCTGTCGCTGG
AAGAAATCGTCAAGAAGTCGTCGGGCGGTGTCTTCAATAACTCGGCACAGGTGTGGAACCACACGTTCTTCTGGAACAGC
CTGTCGCCGCAAGGCGGCGGCGCACCGAAGGGCGCGCTCGCGGACGCGATCAATGCAAAGTGGGGTTCCTTCGACAAGTT
CAAGGAAGAGTTCACGAAGACGGCAGTCGGCACGTTCGGCTCCGGCTGGGCATGGCTCGTGAAGAAGGCAGACGGTTCGC
TGGACCTGGTGTCGACGAGCAATGCAGCCACGCCGCTGACCACGGATGCAAAGCCGCTGCTGACAATCGACGTGTGGGAA
CACGCCTACTACATCGACTATCGCAACGCACGTCCGAAGTTTGTCGAAGCGTACTGGAACATCGTCAACTGGGCCTTCGC
TGAAAAGAATTTCGCGTAA

Upstream 100 bases:

>100_bases
AGGGCTTGCGTTTGCGGGGTTATTCCAAGTCGCCTACAATCGAGTGCTCCCACCGCGTTATCCGCAGACTCCCCATAAAC
AGATACAAAGGAATAGCACC

Downstream 100 bases:

>100_bases
GTCGCTGTCGTGCGCCCGTGAAAATCGCGGGCGGCAGCGTCGACGAAAAGCCCTCATTCATGAGGGCTTTTTCTTTTTCA
GATCGACGTCGATGCTTTGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MEHTLPPLPFAKNALAPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFESLSLEEIVKKSSGGVFNNSAQVWNHTFFWNS
LSPQGGGAPKGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWAFAEKNFA

Sequences:

>Translated_192_residues
MEHTLPPLPFAKNALAPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFESLSLEEIVKKSSGGVFNNSAQVWNHTFFWNS
LSPQGGGAPKGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWAFAEKNFA
>Mature_192_residues
MEHTLPPLPFAKNALAPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFESLSLEEIVKKSSGGVFNNSAQVWNHTFFWNS
LSPQGGGAPKGALADAINAKWGSFDKFKEEFTKTAVGTFGSGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTIDVWE
HAYYIDYRNARPKFVEAYWNIVNWAFAEKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=194, Percent_Identity=44.8453608247423, Blast_Score=168, Evalue=2e-42,
Organism=Homo sapiens, GI67782305, Length=194, Percent_Identity=44.8453608247423, Blast_Score=168, Evalue=2e-42,
Organism=Homo sapiens, GI67782309, Length=186, Percent_Identity=38.1720430107527, Blast_Score=126, Evalue=1e-29,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=68.75, Blast_Score=287, Evalue=3e-79,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=43.2038834951456, Blast_Score=165, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=38.3084577114428, Blast_Score=142, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=38.5, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=38.5714285714286, Blast_Score=131, Evalue=8e-32,
Organism=Drosophila melanogaster, GI17136812, Length=189, Percent_Identity=43.3862433862434, Blast_Score=145, Evalue=2e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21460; Mature: 21460

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTLPPLPFAKNALAPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFESLSLEEIVKKS
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGVFNNSAQVWNHTFFWNSLSPQGGGAPKGALADAINAKWGSFDKFKEEFTKTAVGTFG
CCCEECCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTIDVWEHAYYIDYRNARPKFVEAYWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
IVNWAFAEKNFA
HHHHHHHCCCCC
>Mature Secondary Structure
MEHTLPPLPFAKNALAPHMSEETLEFHYGKHHQTYVTNLNNLIKGTEFESLSLEEIVKKS
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
SGGVFNNSAQVWNHTFFWNSLSPQGGGAPKGALADAINAKWGSFDKFKEEFTKTAVGTFG
CCCEECCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SGWAWLVKKADGSLDLVSTSNAATPLTTDAKPLLTIDVWEHAYYIDYRNARPKFVEAYWN
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
IVNWAFAEKNFA
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]