| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is lptD [H]
Identifier: 186475165
GI number: 186475165
Start: 452101
End: 454467
Strand: Direct
Name: lptD [H]
Synonym: Bphy_0396
Alternate gene names: 186475165
Gene position: 452101-454467 (Clockwise)
Preceding gene: 186475162
Following gene: 186475166
Centisome position: 12.99
GC content: 62.82
Gene sequence:
>2367_bases ATGCCGCCCAGACAGCTTTTCCCAATCACTCCTTCCTCTGACGGCCTGCCGCGCAGAAGGCGGCTCGCCGCGGCGCTGAT CGCCGTGCCGGGTCTGCTGCCCGCGCTCTCGCACGCGCAGCTGGCGGGGGAGGCGGCGCAGGCGCAGCCGATAGACGCGC CGTGGGGCCTGCGGCTGGCCCCACAACTCGAAGAACATTCGACGCCCGAGGGCCAGAGTCCCGCCACCTTCGTGCTGGGC GACTCGACCACGGGCACGGCCGATCAGGACATTGCCGCGAAGGGTTCCGCAGAAGTCCGTCGTGGCAACTCGGCGCTCAA GGCCGACGCGCTTCATTACGATCAGGATACGGACATGGCCGATGCGTACGGCAATGTTCATCTGTCCGGCAACGGCGCCC GCTTTACGGGCCCCGAAGCGCACATGAAGCTGGAATCGAGCGAAGGCTTCATGACCACGCCGAAGTACCACTTCAACGTG ACGGGCGGCTCGGGCAGCGCGGAGCGCGTCGATCTGCTCGACAACGAGCGTTCGGTGTTCACACGCGGCACCTACACGGC GTGCGAGTGCGCAGAAGATCCCGCGTGGTACATCAAGGGTAGCGAGTTCGATTTCGACACGGGCGCCGACAACGGCGTTG CGCACAACGGCGTGCTGTTCTTCCAGGGCGTGCCCGTGTTCGCGAGCCCGTGGCTGTCGTTCCCGCTGTCGGGCGCGCGG CGCAGCGGCCTGTTGCCGCCGACAGCATCGCTCAGTTCGACCAATGGTTTCGAGCTGTCGCTGCCGTACTACTTCAACAT TGCGCCGAACCGCGATCTGACGTTCACGCCGCGCATCCTGTCAAAGCGCGGCGTGCAGTTGCAGTCGACCTTCCGGTATC TGTCGCCGACGTATAGCGGTTCGATCACGGGCGAATTCCTGCCCGACGACAAAATCACGCATACGAACCGCTACGCTCTG TACATCCAGCACAACCAGAACTTCGGTTCGGGTTTCGGCGGTTACATCTACTACAACAAGGTCTCGGACAACACCTATCC GGAAGACCTTGCGTCGACGACCAACCAGTTTCTGAACGGCACGCAGCTGCTGTATCAGCAGGAAGCAGGTCTCACGTACA ACAACGGGCCGTGGTCCGTGCTCGCGCGCGAGCAGCACTGGCAGACGCTTGCGCCTTCAACCGCGCCGTACGGCCGCGAG CCGCAGTTGAACGTGAAGTACACGAAGTACAACGTCGGCGGCTTCGACTTCGGCGCGGAAGCCGACTACACGCGCTTTCG CATTACGACGGCGGATTCGACGGAAGGCGACCGCGTCGTCTTCAATCCGTACCTGTCATACTCCGTGGTCGGTCCGGGTT ACTTTGTCACACCGAAGGTGCAATGGCACTTCGCGTCGTACGACCTGAGCAACATCGGCACGGGTGCGCCCGCGAACCAG CCGAAGAACTTTACGGAATCGGTGCCGACGTTCTCGTTCGACACCGGCCTCATCTTCGACCGGTCGGTGCGAGTGTTCGG CGAGGACTATATCCAGACGCTGGAACCGCGTCTGTACTATGTCTACACGCCGTATCGCAACCAGAGCTTCGCGCCGCTGT TCGACACGGCCGAGTCGGATTTCGGTCTCGCGGAAATCTTCACGCCGAACACGTTTGTCGGTAATGACCGGATCGCCGAT GCGAACCGCCTGACGGCCGCGCTGACCACGCGTTTTCTCAACCCGGCGACGGGCGACGAACGCGCGCGTTTCGTGATCGC GCAACAGTACTATTTCCGCGATCAGCGCGTCACGCTGAATCAGACACAGACCACGGAACAGGCAACGCATTCGGACCTGA TTCTCGGCGCGTCGCTGAAGCTCGGGGCCGGTTTCGCGTCGGAAACTGCGTTCCAATATAATGCGGACAACAATCAGCTG GTCAAGACCAGTGTCGGCTTCGGGTACAGTCCGGCGTCCGGCAAGGTGATCAACGTCGGCTATCGGTACACGCGCGCCAA CACGACGCTCGACAATCAGCCGATCAACCAGCTGCTGATCTCGGGACAATGGCCGCTGATGCACCGTGTTTTCGGCGTCG GGCGGATCAATTACGACCTGAAAGGCCATCGTGCCGTCGACGCGCTGCTCGGCCTGCAATACGACGCGGATTGCTGGACG CTCGGCTTGGGCTTCCAGCGCTACGCAAACGGTGTCAACTCGACGGGCAGCCAGACGGCCGGCACGCGCGTGCTCGCCCA GCTGACGTTCAAGGGGCTGTCGAGCGTCGATAACGGTCTGATGTCGGCGTTCCGCGCAAGCGTGGCGGGCTATCAGCCGC TGCCGCCGCCGCCGCCGCCGGAATCGCAGTTCAACAACTACGAATGA
Upstream 100 bases:
>100_bases TCAATAGTTGTGCATTCGATGCCCGATTGCACAGGCGGCAACTCGTGACTGATGAACCGGGCACATGAACTGACAGCAGG GCCGATACGCCAAACGATAC
Downstream 100 bases:
>100_bases TCGGGGCGCGAGTGACCGGGGTCGCGGGGAGCAAGACCGACACCGCGTCGTTCGCAGAACGGAAACGCAACTTGTTGCAT GGGATCCGGGGGCGCGCCAA
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MPPRQLFPITPSSDGLPRRRRLAAALIAVPGLLPALSHAQLAGEAAQAQPIDAPWGLRLAPQLEEHSTPEGQSPATFVLG DSTTGTADQDIAAKGSAEVRRGNSALKADALHYDQDTDMADAYGNVHLSGNGARFTGPEAHMKLESSEGFMTTPKYHFNV TGGSGSAERVDLLDNERSVFTRGTYTACECAEDPAWYIKGSEFDFDTGADNGVAHNGVLFFQGVPVFASPWLSFPLSGAR RSGLLPPTASLSSTNGFELSLPYYFNIAPNRDLTFTPRILSKRGVQLQSTFRYLSPTYSGSITGEFLPDDKITHTNRYAL YIQHNQNFGSGFGGYIYYNKVSDNTYPEDLASTTNQFLNGTQLLYQQEAGLTYNNGPWSVLAREQHWQTLAPSTAPYGRE PQLNVKYTKYNVGGFDFGAEADYTRFRITTADSTEGDRVVFNPYLSYSVVGPGYFVTPKVQWHFASYDLSNIGTGAPANQ PKNFTESVPTFSFDTGLIFDRSVRVFGEDYIQTLEPRLYYVYTPYRNQSFAPLFDTAESDFGLAEIFTPNTFVGNDRIAD ANRLTAALTTRFLNPATGDERARFVIAQQYYFRDQRVTLNQTQTTEQATHSDLILGASLKLGAGFASETAFQYNADNNQL VKTSVGFGYSPASGKVINVGYRYTRANTTLDNQPINQLLISGQWPLMHRVFGVGRINYDLKGHRAVDALLGLQYDADCWT LGLGFQRYANGVNSTGSQTAGTRVLAQLTFKGLSSVDNGLMSAFRASVAGYQPLPPPPPPESQFNNYE
Sequences:
>Translated_788_residues MPPRQLFPITPSSDGLPRRRRLAAALIAVPGLLPALSHAQLAGEAAQAQPIDAPWGLRLAPQLEEHSTPEGQSPATFVLG DSTTGTADQDIAAKGSAEVRRGNSALKADALHYDQDTDMADAYGNVHLSGNGARFTGPEAHMKLESSEGFMTTPKYHFNV TGGSGSAERVDLLDNERSVFTRGTYTACECAEDPAWYIKGSEFDFDTGADNGVAHNGVLFFQGVPVFASPWLSFPLSGAR RSGLLPPTASLSSTNGFELSLPYYFNIAPNRDLTFTPRILSKRGVQLQSTFRYLSPTYSGSITGEFLPDDKITHTNRYAL YIQHNQNFGSGFGGYIYYNKVSDNTYPEDLASTTNQFLNGTQLLYQQEAGLTYNNGPWSVLAREQHWQTLAPSTAPYGRE PQLNVKYTKYNVGGFDFGAEADYTRFRITTADSTEGDRVVFNPYLSYSVVGPGYFVTPKVQWHFASYDLSNIGTGAPANQ PKNFTESVPTFSFDTGLIFDRSVRVFGEDYIQTLEPRLYYVYTPYRNQSFAPLFDTAESDFGLAEIFTPNTFVGNDRIAD ANRLTAALTTRFLNPATGDERARFVIAQQYYFRDQRVTLNQTQTTEQATHSDLILGASLKLGAGFASETAFQYNADNNQL VKTSVGFGYSPASGKVINVGYRYTRANTTLDNQPINQLLISGQWPLMHRVFGVGRINYDLKGHRAVDALLGLQYDADCWT LGLGFQRYANGVNSTGSQTAGTRVLAQLTFKGLSSVDNGLMSAFRASVAGYQPLPPPPPPESQFNNYE >Mature_787_residues PPRQLFPITPSSDGLPRRRRLAAALIAVPGLLPALSHAQLAGEAAQAQPIDAPWGLRLAPQLEEHSTPEGQSPATFVLGD STTGTADQDIAAKGSAEVRRGNSALKADALHYDQDTDMADAYGNVHLSGNGARFTGPEAHMKLESSEGFMTTPKYHFNVT GGSGSAERVDLLDNERSVFTRGTYTACECAEDPAWYIKGSEFDFDTGADNGVAHNGVLFFQGVPVFASPWLSFPLSGARR SGLLPPTASLSSTNGFELSLPYYFNIAPNRDLTFTPRILSKRGVQLQSTFRYLSPTYSGSITGEFLPDDKITHTNRYALY IQHNQNFGSGFGGYIYYNKVSDNTYPEDLASTTNQFLNGTQLLYQQEAGLTYNNGPWSVLAREQHWQTLAPSTAPYGREP QLNVKYTKYNVGGFDFGAEADYTRFRITTADSTEGDRVVFNPYLSYSVVGPGYFVTPKVQWHFASYDLSNIGTGAPANQP KNFTESVPTFSFDTGLIFDRSVRVFGEDYIQTLEPRLYYVYTPYRNQSFAPLFDTAESDFGLAEIFTPNTFVGNDRIADA NRLTAALTTRFLNPATGDERARFVIAQQYYFRDQRVTLNQTQTTEQATHSDLILGASLKLGAGFASETAFQYNADNNQLV KTSVGFGYSPASGKVINVGYRYTRANTTLDNQPINQLLISGQWPLMHRVFGVGRINYDLKGHRAVDALLGLQYDADCWTL GLGFQRYANGVNSTGSQTAGTRVLAQLTFKGLSSVDNGLMSAFRASVAGYQPLPPPPPPESQFNNYE
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=737, Percent_Identity=27.6797829036635, Blast_Score=258, Evalue=8e-70,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR007543 [H]
Pfam domain/function: PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 86526; Mature: 86394
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRQLFPITPSSDGLPRRRRLAAALIAVPGLLPALSHAQLAGEAAQAQPIDAPWGLRLA CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCEEC PQLEEHSTPEGQSPATFVLGDSTTGTADQDIAAKGSAEVRRGNSALKADALHYDQDTDMA CCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEECCEECCCCCCHH DAYGNVHLSGNGARFTGPEAHMKLESSEGFMTTPKYHFNVTGGSGSAERVDLLDNERSVF HCCCEEEECCCCCEECCCHHEEEEECCCCEEECCEEEEEEECCCCCCEEEEECCCCCCEE TRGTYTACECAEDPAWYIKGSEFDFDTGADNGVAHNGVLFFQGVPVFASPWLSFPLSGAR ECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHCCHHHCCCCCCH RSGLLPPTASLSSTNGFELSLPYYFNIAPNRDLTFTPRILSKRGVQLQSTFRYLSPTYSG HCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCEECHHHHHHCCCCHHHHHHHHCCCCCC SITGEFLPDDKITHTNRYALYIQHNQNFGSGFGGYIYYNKVSDNTYPEDLASTTNQFLNG CEEECCCCCCCEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC TQLLYQQEAGLTYNNGPWSVLAREQHWQTLAPSTAPYGREPQLNVKYTKYNVGGFDFGAE CEEEEECCCCCEECCCCEEEEEEHHCCHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC ADYTRFRITTADSTEGDRVVFNPYLSYSVVGPGYFVTPKVQWHFASYDLSNIGTGAPANQ CCCEEEEEEECCCCCCCEEEECCCEEEEEECCCEEECCEEEEEEEEECHHHCCCCCCCCC PKNFTESVPTFSFDTGLIFDRSVRVFGEDYIQTLEPRLYYVYTPYRNQSFAPLFDTAESD CCCHHHCCCCEECCCCEEEECCEEECCHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCC FGLAEIFTPNTFVGNDRIADANRLTAALTTRFLNPATGDERARFVIAQQYYFRDQRVTLN CCEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEC QTQTTEQATHSDLILGASLKLGAGFASETAFQYNADNNQLVKTSVGFGYSPASGKVINVG CCCCHHHHCCCCEEEECCEEECCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEE YRYTRANTTLDNQPINQLLISGQWPLMHRVFGVGRINYDLKGHRAVDALLGLQYDADCWT EEEEECCCCCCCCCHHHHEECCCCHHHHHHHCCCEEEEECCCCHHHHHHHCCEECCCEEE LGLGFQRYANGVNSTGSQTAGTRVLAQLTFKGLSSVDNGLMSAFRASVAGYQPLPPPPPP ECCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ESQFNNYE CCCCCCCC >Mature Secondary Structure PPRQLFPITPSSDGLPRRRRLAAALIAVPGLLPALSHAQLAGEAAQAQPIDAPWGLRLA CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCEEC PQLEEHSTPEGQSPATFVLGDSTTGTADQDIAAKGSAEVRRGNSALKADALHYDQDTDMA CCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEECCEECCCCCCHH DAYGNVHLSGNGARFTGPEAHMKLESSEGFMTTPKYHFNVTGGSGSAERVDLLDNERSVF HCCCEEEECCCCCEECCCHHEEEEECCCCEEECCEEEEEEECCCCCCEEEEECCCCCCEE TRGTYTACECAEDPAWYIKGSEFDFDTGADNGVAHNGVLFFQGVPVFASPWLSFPLSGAR ECCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHCCHHHCCCCCCH RSGLLPPTASLSSTNGFELSLPYYFNIAPNRDLTFTPRILSKRGVQLQSTFRYLSPTYSG HCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCEECHHHHHHCCCCHHHHHHHHCCCCCC SITGEFLPDDKITHTNRYALYIQHNQNFGSGFGGYIYYNKVSDNTYPEDLASTTNQFLNG CEEECCCCCCCEECCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC TQLLYQQEAGLTYNNGPWSVLAREQHWQTLAPSTAPYGREPQLNVKYTKYNVGGFDFGAE CEEEEECCCCCEECCCCEEEEEEHHCCHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC ADYTRFRITTADSTEGDRVVFNPYLSYSVVGPGYFVTPKVQWHFASYDLSNIGTGAPANQ CCCEEEEEEECCCCCCCEEEECCCEEEEEECCCEEECCEEEEEEEEECHHHCCCCCCCCC PKNFTESVPTFSFDTGLIFDRSVRVFGEDYIQTLEPRLYYVYTPYRNQSFAPLFDTAESD CCCHHHCCCCEECCCCEEEECCEEECCHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCC FGLAEIFTPNTFVGNDRIADANRLTAALTTRFLNPATGDERARFVIAQQYYFRDQRVTLN CCEEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEC QTQTTEQATHSDLILGASLKLGAGFASETAFQYNADNNQLVKTSVGFGYSPASGKVINVG CCCCHHHHCCCCEEEECCEEECCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCEEEEE YRYTRANTTLDNQPINQLLISGQWPLMHRVFGVGRINYDLKGHRAVDALLGLQYDADCWT EEEEECCCCCCCCCHHHHEECCCCHHHHHHHCCCEEEEECCCCHHHHHHHCCEECCCEEE LGLGFQRYANGVNSTGSQTAGTRVLAQLTFKGLSSVDNGLMSAFRASVAGYQPLPPPPPP ECCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC ESQFNNYE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA