| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is fadN [H]
Identifier: 186475155
GI number: 186475155
Start: 438011
End: 440455
Strand: Direct
Name: fadN [H]
Synonym: Bphy_0386
Alternate gene names: 186475155
Gene position: 438011-440455 (Clockwise)
Preceding gene: 186475154
Following gene: 186475156
Centisome position: 12.59
GC content: 64.13
Gene sequence:
>2445_bases GTGAGCAATCTGATCATTCGCAAGGTCGCCGTGCTCGGCGCCGGCGTGATGGGCGCGCAGATCGCTGCGCACCTGATCAA CGCGAAGGTGCCCGTGCTGCTGTTCGACCTGCCCGCAAAGGAAGGCCCGAAGAACGGCATCGCGCTGAAGGCGATCGAAA ACCTGAAAAAGCTGTCGCCCGCGCCATTCGGCGCGAAGGACGACGCACAATACATTCAGCCAGCCAACTACGACGACGAC ATCGAAAAGCTCGCCGAATGCGATGTGGTGATCGAAGCGATCGCCGAGCGCATGGACTGGAAGCACGACCTGTATAAGAA GGTGTCGCCGCACATCGGCGCGAACGCGATCTTCGCAACGAATACGTCGGGCCTGTCGATCACCGAACTGTCGAAGGGGT TCTCCGACGAACTGAAGGCGCGCTTCTGCGGCGTGCACTTCTTCAATCCGCCGCGCTACATGCATCTGGTCGAGCTGATC CCGACCGCGACGACCCGCCCGGAAATCCTCGATCAACTCGAAACGTTCCTGACGAGCGTGGTCGGCAAGGGCGTCGTGCG CGCGAAGGACACGCCGAACTTCATCGCGAACCGCGTCGGCATTTTCTCGATTCTCGCCGTCATCAAGGAAGCCGAGAAGT TCGGCCTGCGCTTCGATGAGGTCGACGACCTGACGGGCAGCCGACTGGGCCGCGCGAAGTCGGCGACGTTCCGCACGGCG GACGTGGTCGGTCTGGACACGATGGCGCACGTGATCAAGACGATGCAGGACAACCTCGCGGATGATCCGTTCTTCGCCGT CTACGAAACGCCCGCCGTGCTGACCGGACTCGTGCAGCAGGGCGCGCTCGGCCAGAAGACGGGCGCGGGCTTCTACAAGA AGGAAGGCAAGGCGATCAAGGTGCTCGACGCGAAGTCGGGCAGCTACGTCGACGGCGGCGCGAAGGCGGACGAACTGGTC GGCCGCATTCTGAAGCGCCCTCCCGCCGAGCGTCTGAAGCTGCTGCGCGAGTCGCAGCATCCGCAGGCGCAATTCCTGTG GGCGATCTTCCGCGATGTCTTCCATTACATCGGTGTGCATCTCGAGTCGATCGCCGACAACGCCCGCGATGTCGATTTCG CGATCCGCTGGGGCTTCGGCTGGAGCGAAGGTCCGTTCGAGGGTTGGCAGACGGCGGGCTGGAAGCAGATCGCCGGATGG GTGCAGGAGGACATCGCGGCAGGCAAGGCGCTGTCGAACGCGCCGCTGCCCGCGTGGGTGCTCGAAGGCGCGGTTGCCGA GAAGGGCGGCGTGCATACCGACGAAGGCTCGTGGTCGCCGGCTGAGAAGCGCTTCGTGCCACGCTCGTCGTTGTCCGTGT ATGACCGGCAGGTGTTCCGGGCACCGCTTGCGGGCGAATCGAACGGAGGGGGCGCCGATCCGAAGCGCTACGGCAAGACC GTGTTCGAAACGGACGCCGTGCGCGCATGGGTCGACGATCGCGCCGGCGAGAACGATGTCCTGATTGTGTCGTTCAAGAG CAAGATGAACACGATCGGACCGTCGGTGATCGATGGCATCGAAAAGGCCATCGATGCGGCTGAGAAGGACTACAAGGCCG TCGTGATCTGGCAGCCGGCGTCGCTCAAGCTCGGCGCGCCGGGCGGCCCGTTCTCGGCGGGCGCAAATCTCGAAGAAGCG ATGCCCGCGTTCATGATGGGCGGCGCGAAAGGCATCGAGCCGTTCGTGAAGAAATTCCAGCAGGGCATGCTGCGCGTGAA GTATTCGAACGTGCCCGTGGTCGCGGCCGTGTCGGGCATTGCGCTCGGCGGCGGGTGCGAGCTGCTGCTGCATAGCGCGA AGCGCGTCGCGCACATCGAGAGCTATATCGGTCTCGTTGAAGTGGGCGTGGGTCTTGTGCCGGCGGGCGGCGGTCTGAAG GAAGCTGCGTTGCGTGCCGCCGAAACGGCGACGCAAGTCGGCGCAACCAGCGATCTGCTCAAGTTCCTGCAGAAGTCGTT CGAGAACGCGGCGATGGCGAAGGTGTCGACATCCGCGCTCGACGCCCGCGCAATGGGCTACCTGAAGCCGTCGGACACGA TCGTGTTCAACGTCTTCGAACTGCTCGATACCGCGAAGAAAGAAGCGCGTGCATTGGCGGCTGCCGGTTATCGCGCGCCG CTGCGCGTGACGCAGGTGCCCGTCGCGGGACGCTCGGCGATGTCGACGATCAAGGCATCACTCGTCAACATGCGCGACGG CCGCTTCATCAGCGACCACGACTACCTGATTGCGAGCCGCATCGCGGAAGCGGTGTGCGGCGGCGACGTCGAAGCGGGCA GTCTCGTCGATGAGGAATGGCTGCTGGCGCTGGAGCGTCGCGCGTTCGTCGAGTTGCTCGGCACGCAGAAGACGCAGGAA CGGATCATGGGCATGCTGCAAACGGGTAAGCCGGTGCGCAACTGA
Upstream 100 bases:
>100_bases CCGTGCGCCGCCCACCCTCTCTCACACCCATGCCGCGCGCCGCTCGTCATAGCACGCGCGCGGCGACTCGCGACACCGCA TAACGCCCCGGAGGAACGAC
Downstream 100 bases:
>100_bases GGGAGCCTCAAATGACAAAGCAATTGCAGGACGCATATATCGTTGCCGCGAGCCGCACGCCGATCGGCAAGGCGCCGCGC GGGATGTTCCGGAACACGCG
Product: 3-hydroxyacyl-CoA dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGAKDDAQYIQPANYDDD IEKLAECDVVIEAIAERMDWKHDLYKKVSPHIGANAIFATNTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELI PTATTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVIKEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFAVYETPAVLTGLVQQGALGQKTGAGFYKKEGKAIKVLDAKSGSYVDGGAKADELV GRILKRPPAERLKLLRESQHPQAQFLWAIFRDVFHYIGVHLESIADNARDVDFAIRWGFGWSEGPFEGWQTAGWKQIAGW VQEDIAAGKALSNAPLPAWVLEGAVAEKGGVHTDEGSWSPAEKRFVPRSSLSVYDRQVFRAPLAGESNGGGADPKRYGKT VFETDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGIEKAIDAAEKDYKAVVIWQPASLKLGAPGGPFSAGANLEEA MPAFMMGGAKGIEPFVKKFQQGMLRVKYSNVPVVAAVSGIALGGGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLK EAALRAAETATQVGATSDLLKFLQKSFENAAMAKVSTSALDARAMGYLKPSDTIVFNVFELLDTAKKEARALAAAGYRAP LRVTQVPVAGRSAMSTIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQE RIMGMLQTGKPVRN
Sequences:
>Translated_814_residues MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGAKDDAQYIQPANYDDD IEKLAECDVVIEAIAERMDWKHDLYKKVSPHIGANAIFATNTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELI PTATTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVIKEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFAVYETPAVLTGLVQQGALGQKTGAGFYKKEGKAIKVLDAKSGSYVDGGAKADELV GRILKRPPAERLKLLRESQHPQAQFLWAIFRDVFHYIGVHLESIADNARDVDFAIRWGFGWSEGPFEGWQTAGWKQIAGW VQEDIAAGKALSNAPLPAWVLEGAVAEKGGVHTDEGSWSPAEKRFVPRSSLSVYDRQVFRAPLAGESNGGGADPKRYGKT VFETDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGIEKAIDAAEKDYKAVVIWQPASLKLGAPGGPFSAGANLEEA MPAFMMGGAKGIEPFVKKFQQGMLRVKYSNVPVVAAVSGIALGGGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLK EAALRAAETATQVGATSDLLKFLQKSFENAAMAKVSTSALDARAMGYLKPSDTIVFNVFELLDTAKKEARALAAAGYRAP LRVTQVPVAGRSAMSTIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQE RIMGMLQTGKPVRN >Mature_813_residues SNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGAKDDAQYIQPANYDDDI EKLAECDVVIEAIAERMDWKHDLYKKVSPHIGANAIFATNTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELIP TATTRPEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVIKEAEKFGLRFDEVDDLTGSRLGRAKSATFRTAD VVGLDTMAHVIKTMQDNLADDPFFAVYETPAVLTGLVQQGALGQKTGAGFYKKEGKAIKVLDAKSGSYVDGGAKADELVG RILKRPPAERLKLLRESQHPQAQFLWAIFRDVFHYIGVHLESIADNARDVDFAIRWGFGWSEGPFEGWQTAGWKQIAGWV QEDIAAGKALSNAPLPAWVLEGAVAEKGGVHTDEGSWSPAEKRFVPRSSLSVYDRQVFRAPLAGESNGGGADPKRYGKTV FETDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGIEKAIDAAEKDYKAVVIWQPASLKLGAPGGPFSAGANLEEAM PAFMMGGAKGIEPFVKKFQQGMLRVKYSNVPVVAAVSGIALGGGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLKE AALRAAETATQVGATSDLLKFLQKSFENAAMAKVSTSALDARAMGYLKPSDTIVFNVFELLDTAKKEARALAAAGYRAPL RVTQVPVAGRSAMSTIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEWLLALERRAFVELLGTQKTQER IMGMLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=302, Percent_Identity=32.1192052980132, Blast_Score=127, Evalue=5e-29, Organism=Homo sapiens, GI296179427, Length=317, Percent_Identity=31.5457413249211, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI20127408, Length=425, Percent_Identity=26.8235294117647, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI261878539, Length=402, Percent_Identity=23.8805970149254, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI68989263, Length=427, Percent_Identity=23.6533957845433, Blast_Score=84, Evalue=7e-16, Organism=Escherichia coli, GI1787661, Length=315, Percent_Identity=30.1587301587302, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI1790281, Length=213, Percent_Identity=29.5774647887324, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1788682, Length=331, Percent_Identity=25.3776435045317, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17553560, Length=295, Percent_Identity=32.2033898305085, Blast_Score=122, Evalue=9e-28, Organism=Caenorhabditis elegans, GI17563036, Length=293, Percent_Identity=32.0819112627986, Blast_Score=119, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17549919, Length=299, Percent_Identity=31.438127090301, Blast_Score=118, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17558304, Length=388, Percent_Identity=26.8041237113402, Blast_Score=96, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17508953, Length=291, Percent_Identity=31.9587628865979, Blast_Score=94, Evalue=4e-19, Organism=Caenorhabditis elegans, GI25144276, Length=291, Percent_Identity=31.9587628865979, Blast_Score=93, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17508951, Length=291, Percent_Identity=31.9587628865979, Blast_Score=93, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71985930, Length=406, Percent_Identity=22.4137931034483, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71985923, Length=296, Percent_Identity=26.6891891891892, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583077, Length=348, Percent_Identity=25.5747126436782, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI24583079, Length=348, Percent_Identity=25.5747126436782, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI19921000, Length=348, Percent_Identity=25.5747126436782, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI45549573, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87708; Mature: 87576
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGAKDDAQYIQPANYDDDIEKLAECDVVIEAIAERMDWKHDLYKKVSPHIGANAIFAT CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEE NTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLETFLTSV CCCCCCHHHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVIKEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFAVYETPAVLTGLVQQGALGQKTGAGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE VLDAKSGSYVDGGAKADELVGRILKRPPAERLKLLRESQHPQAQFLWAIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LESIADNARDVDFAIRWGFGWSEGPFEGWQTAGWKQIAGWVQEDIAAGKALSNAPLPAWV HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH LEGAVAEKGGVHTDEGSWSPAEKRFVPRSSLSVYDRQVFRAPLAGESNGGGADPKRYGKT HHCHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCH VFETDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGIEKAIDAAEKDYKAVVIWQPA HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCC SLKLGAPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYSNVPVVAAVSGI CEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEHHCE ALGGGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLKEAALRAAETATQVGATSDLL EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHH KFLQKSFENAAMAKVSTSALDARAMGYLKPSDTIVFNVFELLDTAKKEARALAAAGYRAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC LRVTQVPVAGRSAMSTIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEW CEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHH LLALERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNLIIRKVAVLGAGVMGAQIAAHLINAKVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGAKDDAQYIQPANYDDDIEKLAECDVVIEAIAERMDWKHDLYKKVSPHIGANAIFAT CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEE NTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELIPTATTRPEILDQLETFLTSV CCCCCCHHHHHCCHHHHHHHHHHCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVIKEAEKFGLRFDEVDDLTGSRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCHH DVVGLDTMAHVIKTMQDNLADDPFFAVYETPAVLTGLVQQGALGQKTGAGFYKKEGKAIK HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE VLDAKSGSYVDGGAKADELVGRILKRPPAERLKLLRESQHPQAQFLWAIFRDVFHYIGVH EEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LESIADNARDVDFAIRWGFGWSEGPFEGWQTAGWKQIAGWVQEDIAAGKALSNAPLPAWV HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH LEGAVAEKGGVHTDEGSWSPAEKRFVPRSSLSVYDRQVFRAPLAGESNGGGADPKRYGKT HHCHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCH VFETDAVRAWVDDRAGENDVLIVSFKSKMNTIGPSVIDGIEKAIDAAEKDYKAVVIWQPA HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCC SLKLGAPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYSNVPVVAAVSGI CEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEHHCE ALGGGCELLLHSAKRVAHIESYIGLVEVGVGLVPAGGGLKEAALRAAETATQVGATSDLL EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHH KFLQKSFENAAMAKVSTSALDARAMGYLKPSDTIVFNVFELLDTAKKEARALAAAGYRAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC LRVTQVPVAGRSAMSTIKASLVNMRDGRFISDHDYLIASRIAEAVCGGDVEAGSLVDEEW CEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHH LLALERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]