| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is rbpA3 [H]
Identifier: 183222473
GI number: 183222473
Start: 3241557
End: 3241820
Strand: Direct
Name: rbpA3 [H]
Synonym: LEPBI_I3127
Alternate gene names: 183222473
Gene position: 3241557-3241820 (Clockwise)
Preceding gene: 183222472
Following gene: 183222475
Centisome position: 90.05
GC content: 37.88
Gene sequence:
>264_bases ATGTCAGTAAACATTTATGTTGGCAACCTCTCTTACGATATGACTGAAGGTAAACTCAGTGAGCTTTTCGGAGCACATGG AGCAGTAACTTCTGCAAAAATCATCACTGATCAGTATTCTGGTCGTTCTAAAGGTTTCGGATTCATCGAAATGAAAGATG GAAAAGAAGCTGATAACGCGATCAAAGATCTTAACGGAAAAAACATCCTTAACCGTGAGATGAAAGTAAACATCGCAAAA CCTAAAACAAACAACTGGAGATAA
Upstream 100 bases:
>100_bases CCTGCATTTTTCTGGAGTTCTTACCAAAAATCCCTTCTAGGGTCCCGACGATTGTAAATCTAGAATTCCCGAGTCAACTT TAACAAACAGGACAAAAACT
Downstream 100 bases:
>100_bases TTCAGTTTGTTCAAAAAACCGTCGCTTAGCTTTGGTTAAGTGACGGTTTTTTTTTGCCCAAATTTCTTACAAAATCACCT TAAACTTTGCCTTCATCTTC
Product: RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MSVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNAIKDLNGKNILNREMKVNIAK PKTNNWR
Sequences:
>Translated_87_residues MSVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNAIKDLNGKNILNREMKVNIAK PKTNNWR >Mature_86_residues SVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNAIKDLNGKNILNREMKVNIAKP KTNNWR
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI14149675, Length=81, Percent_Identity=34.5679012345679, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI4557493, Length=81, Percent_Identity=34.5679012345679, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI46367787, Length=79, Percent_Identity=37.9746835443038, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI45238849, Length=79, Percent_Identity=37.9746835443038, Blast_Score=66, Evalue=6e-12, Organism=Homo sapiens, GI283945537, Length=85, Percent_Identity=36.4705882352941, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI283945529, Length=85, Percent_Identity=36.4705882352941, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI115511032, Length=85, Percent_Identity=36.4705882352941, Blast_Score=66, Evalue=7e-12, Organism=Homo sapiens, GI221316769, Length=85, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI49355761, Length=84, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI49355765, Length=84, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI221316767, Length=85, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI221316771, Length=85, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI221316773, Length=85, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=38.2716049382716, Blast_Score=63, Evalue=6e-11, Organism=Homo sapiens, GI221316765, Length=84, Percent_Identity=35.7142857142857, Blast_Score=62, Evalue=7e-11, Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=36.5853658536585, Blast_Score=62, Evalue=8e-11, Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=36.5853658536585, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17553656, Length=81, Percent_Identity=38.2716049382716, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567133, Length=82, Percent_Identity=39.0243902439024, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567131, Length=82, Percent_Identity=39.0243902439024, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=34.2105263157895, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71993217, Length=82, Percent_Identity=39.0243902439024, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71993203, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71993209, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=37.3333333333333, Blast_Score=61, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6321599, Length=84, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=8e-12, Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=44.7368421052632, Blast_Score=72, Evalue=8e-14, Organism=Drosophila melanogaster, GI221330652, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI62471589, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI19549692, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI19549690, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI221330653, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI19549688, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI19549694, Length=80, Percent_Identity=46.25, Blast_Score=65, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 9642; Mature: 9511
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNA CEEEEEECCCEEECCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHH IKDLNGKNILNREMKVNIAKPKTNNWR HHCCCCCCEECCEEEEEEECCCCCCCC >Mature Secondary Structure SVNIYVGNLSYDMTEGKLSELFGAHGAVTSAKIITDQYSGRSKGFGFIEMKDGKEADNA EEEEEECCCEEECCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCHHH IKDLNGKNILNREMKVNIAKPKTNNWR HHCCCCCCEECCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8704138; 8590279; 8905231 [H]