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The map label for this gene is rpoE [C]

Identifier: 183222342

GI number: 183222342

Start: 3101915

End: 3102787

Strand: Direct

Name: rpoE [C]

Synonym: LEPBI_I2995

Alternate gene names: 183222342

Gene position: 3101915-3102787 (Clockwise)

Preceding gene: 183222341

Following gene: 183222344

Centisome position: 86.17

GC content: 37.46

Gene sequence:

>873_bases
ATGATCGAAGATCCACATTCATCTCTTTTAGAGGATTGTTTAAAAGGAAAAACAAAAGCGTTGGAAGGATTGATTCAATT
CTTCCAACCCAAAATATTTTCTTTGGCATTAAAGTTTTTATGGAATCCGGAAGATGCAGAAGATGCCACTCAAGAAATTT
TAGTCAAAGTGATTACAAATCTCGGTGGGTTTCGTAGAGATAGTAAACTCTCTACTTGGATCTATAAAATTGCAAGTAAC
CACCTCATCAATGTCAAAAAATCAAAAATTGAGATGAAACAAATCCACTTTCGATCCATTCGTGAAGAATTGCATAAAAC
GCAATCGCCATATCCAATCCAAGCGAGTATAGATACACAAACTTTAACCGAAGAAGAATCTACTTCCAAAGTTTCGCATA
TGGTATTACATGTGCAAGTGGCATGCACCTATGCTATGTTACAAGGACTCACTCGCAAATACAGAATGGCATATATATTG
GGAGATGTATTTTCCATTTCTAGTGAGGAAGGTGGGATGGTGATGGGAGTGCGCCCCGATTCGTTCCGACAATTATTATC
GAGAGCAAGAAATCAAATGGAAGTATTCTTAGGAAGGGAATGTAATTTAACAAACAGAAACAATCCATGCCAATGTAAAA
ACAGGATACGTTATGCAACCAAAGTGGGAAGGATCAAGTCTTACCTCAATTTGTCCGAACAAATGAAAAAAGATGGAAGG
TGGAATGAGATCAAACCTTTGTTGCCTGAAACCATTAAAATCCGAAAGGCGGCCGAAATCTTTCGAAACCAACCAACATT
TTTACCAAAAAAAAACCAACTGGAAAGTATTCGAACTTTGTTAGATAACTCGTTTCCATTCTCGGCTCGGTGA

Upstream 100 bases:

>100_bases
GAATTTACGGTTCAGCCACTGCAAAATTTTCAATTTTGTTTTCGCAAGGTTTGCCTGCATTTTTAGCCTTAGTTGTACAT
TGGTTGGCTTATCGTAAACA

Downstream 100 bases:

>100_bases
ATTTCCATAAATTCGTTTGTATGCCTTTGAAAAAGAAAATGCGGACGCATAACCCACATTTTGCGCAATTTCTTCGAGAC
CCATATTTCCTTTCTGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor RpoE; Sigma-70 Region 2 Family Protein; RNA Polymerase Sigma Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MIEDPHSSLLEDCLKGKTKALEGLIQFFQPKIFSLALKFLWNPEDAEDATQEILVKVITNLGGFRRDSKLSTWIYKIASN
HLINVKKSKIEMKQIHFRSIREELHKTQSPYPIQASIDTQTLTEEESTSKVSHMVLHVQVACTYAMLQGLTRKYRMAYIL
GDVFSISSEEGGMVMGVRPDSFRQLLSRARNQMEVFLGRECNLTNRNNPCQCKNRIRYATKVGRIKSYLNLSEQMKKDGR
WNEIKPLLPETIKIRKAAEIFRNQPTFLPKKNQLESIRTLLDNSFPFSAR

Sequences:

>Translated_290_residues
MIEDPHSSLLEDCLKGKTKALEGLIQFFQPKIFSLALKFLWNPEDAEDATQEILVKVITNLGGFRRDSKLSTWIYKIASN
HLINVKKSKIEMKQIHFRSIREELHKTQSPYPIQASIDTQTLTEEESTSKVSHMVLHVQVACTYAMLQGLTRKYRMAYIL
GDVFSISSEEGGMVMGVRPDSFRQLLSRARNQMEVFLGRECNLTNRNNPCQCKNRIRYATKVGRIKSYLNLSEQMKKDGR
WNEIKPLLPETIKIRKAAEIFRNQPTFLPKKNQLESIRTLLDNSFPFSAR
>Mature_290_residues
MIEDPHSSLLEDCLKGKTKALEGLIQFFQPKIFSLALKFLWNPEDAEDATQEILVKVITNLGGFRRDSKLSTWIYKIASN
HLINVKKSKIEMKQIHFRSIREELHKTQSPYPIQASIDTQTLTEEESTSKVSHMVLHVQVACTYAMLQGLTRKYRMAYIL
GDVFSISSEEGGMVMGVRPDSFRQLLSRARNQMEVFLGRECNLTNRNNPCQCKNRIRYATKVGRIKSYLNLSEQMKKDGR
WNEIKPLLPETIKIRKAAEIFRNQPTFLPKKNQLESIRTLLDNSFPFSAR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33515; Mature: 33515

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDPHSSLLEDCLKGKTKALEGLIQFFQPKIFSLALKFLWNPEDAEDATQEILVKVITN
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LGGFRRDSKLSTWIYKIASNHLINVKKSKIEMKQIHFRSIREELHKTQSPYPIQASIDTQ
HCCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHH
TLTEEESTSKVSHMVLHVQVACTYAMLQGLTRKYRMAYILGDVFSISSEEGGMVMGVRPD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
SFRQLLSRARNQMEVFLGRECNLTNRNNPCQCKNRIRYATKVGRIKSYLNLSEQMKKDGR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNEIKPLLPETIKIRKAAEIFRNQPTFLPKKNQLESIRTLLDNSFPFSAR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIEDPHSSLLEDCLKGKTKALEGLIQFFQPKIFSLALKFLWNPEDAEDATQEILVKVITN
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LGGFRRDSKLSTWIYKIASNHLINVKKSKIEMKQIHFRSIREELHKTQSPYPIQASIDTQ
HCCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHH
TLTEEESTSKVSHMVLHVQVACTYAMLQGLTRKYRMAYILGDVFSISSEEGGMVMGVRPD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
SFRQLLSRARNQMEVFLGRECNLTNRNNPCQCKNRIRYATKVGRIKSYLNLSEQMKKDGR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WNEIKPLLPETIKIRKAAEIFRNQPTFLPKKNQLESIRTLLDNSFPFSAR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA