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The map label for this gene is nirD [H]

Identifier: 183222124

GI number: 183222124

Start: 2866317

End: 2866697

Strand: Direct

Name: nirD [H]

Synonym: LEPBI_I2767

Alternate gene names: 183222124

Gene position: 2866317-2866697 (Clockwise)

Preceding gene: 183222123

Following gene: 183222125

Centisome position: 79.63

GC content: 38.58

Gene sequence:

>381_bases
ATGCAAACAAATCAAAATACAAAAGAAAAAGTATTCATCGGTCCAGTTTCTGAATTTGAAAGAGAAGGTGGGGTGAGTGC
CAAAATAGGAAACAAACAAATTGCTATTTTCTATTTTGAATCTAGAAATGAGTGGTATGCCTGTGACAATGCATGCCCTC
ACACGGGAGATATGGTTTTATCCAGAGGATTACTTGGTGATTCCAATGGAGAGCCAAAGGTAGTTTGTCCTCTTCACAAA
CGTAATTTTTCGCTGCAATCAGGTGAGTGCCTCAATGATGAAAACCTGAAAGTGAGTTTGTATCAGGTACTTGTGGAGAA
TGGTTCTGTTTATTTAGAAATAGAGTCATCTCTTCTGCAACAACTGGGTTACACATCGTGA

Upstream 100 bases:

>100_bases
ACAGATCCTAACATTCAATTTACGGAAGAACGTGGTCAAATTCGACCTGTGGATTGGGTTGAAAAAGACTTGGTGAATAC
TTAAAAGAGGTAAAAATCAT

Downstream 100 bases:

>100_bases
ACTCTACTGCATCGGGAAAAAATCGAGGGAAGGTTTATTTGGTGGGTGCCGGACCTGGAGATCCAGAATTACTCACGATG
AAAGCACTGAAAATCCTGAG

Product: nitrite reductase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MQTNQNTKEKVFIGPVSEFEREGGVSAKIGNKQIAIFYFESRNEWYACDNACPHTGDMVLSRGLLGDSNGEPKVVCPLHK
RNFSLQSGECLNDENLKVSLYQVLVENGSVYLEIESSLLQQLGYTS

Sequences:

>Translated_126_residues
MQTNQNTKEKVFIGPVSEFEREGGVSAKIGNKQIAIFYFESRNEWYACDNACPHTGDMVLSRGLLGDSNGEPKVVCPLHK
RNFSLQSGECLNDENLKVSLYQVLVENGSVYLEIESSLLQQLGYTS
>Mature_126_residues
MQTNQNTKEKVFIGPVSEFEREGGVSAKIGNKQIAIFYFESRNEWYACDNACPHTGDMVLSRGLLGDSNGEPKVVCPLHK
RNFSLQSGECLNDENLKVSLYQVLVENGSVYLEIESSLLQQLGYTS

Specific function: Required For Activity Of The Reductase. [C]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=100, Percent_Identity=37, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR013027
- InterPro:   IPR005117
- InterPro:   IPR012744
- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR006067
- InterPro:   IPR006066
- InterPro:   IPR001327
- InterPro:   IPR017941 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 14053; Mature: 14053

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNQNTKEKVFIGPVSEFEREGGVSAKIGNKQIAIFYFESRNEWYACDNACPHTGDMVL
CCCCCCCCCEEEECCHHHHHHCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCCHHHH
SRGLLGDSNGEPKVVCPLHKRNFSLQSGECLNDENLKVSLYQVLVENGSVYLEIESSLLQ
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCEEEEEHHHHHH
QLGYTS
HCCCCC
>Mature Secondary Structure
MQTNQNTKEKVFIGPVSEFEREGGVSAKIGNKQIAIFYFESRNEWYACDNACPHTGDMVL
CCCCCCCCCEEEECCHHHHHHCCCCEEEECCEEEEEEEEECCCCEEEECCCCCCCCHHHH
SRGLLGDSNGEPKVVCPLHKRNFSLQSGECLNDENLKVSLYQVLVENGSVYLEIESSLLQ
HCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCCEEEEEHHHHHH
QLGYTS
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8468296 [H]