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The map label for this gene is araC [C]

Identifier: 183220616

GI number: 183220616

Start: 1273489

End: 1274805

Strand: Reverse

Name: araC [C]

Synonym: LEPBI_I1222

Alternate gene names: 183220616

Gene position: 1274805-1273489 (Counterclockwise)

Preceding gene: 183220617

Following gene: 183220613

Centisome position: 35.41

GC content: 35.08

Gene sequence:

>1317_bases
TTGGAATGGAAAGCCCTAGACTTTGCTAGATTGTATTATTCAGAACAAAGTAAAGAATTCAAATTCATTGATACAGGAGA
CACAATCCCTAAATCAAAATGGATTTTACCAGAATCACTTTATCCTAGTTTTCCAATTCCAAAACAAAATTCAGGAGATT
ACTTCTATATCCGAATCCAATCAAAGTCCTTAATTTCTTTTCCCATTCGCTCTCTAAGCGAAAGATCACTTAACAAACGA
ATGATTGTCGAAACCGCGATCACTTGGCTCATCATAGGAGTCTGCGCAGTTATGATTGTATTTGCATTATTCTATTTTTT
TGCTTTTGGCTTAAGTGAATTTTTCTTTTATGCAGGTTATGTTGTTTGCACTGTCCTCTGGTACAATGGACAATATGGAA
ACGCATATGATGTATTATGGCCTGAATCTCCTTGGTGGCAAAACAAAGCGATCTTAGTATTTTCTACTCTTGGCATACCT
TTTTCCTTCCAATTTGTGCGAATGTTTTTAAATACAAAAGTAAACAATCCTCGGATTGATAAAATTTTACTGATTATGGG
AATCATCGCAATGTTTTGTATCCCAGCGATTCTTACATCCTATACAACTAAAATTTTTTCTAGGATCGCTACCTATATTT
ATTTAATTTCCATTCCAATCATTCTGGGAACTGCCTTAAAAAATTATATCAAAGGGGAAAAACAAATCCTTTTCTTTCTC
TTAAGCTGGGGATCTTATTTTATTGTGAGTTACAATACGATGTTTTATTTTTTGGGAATCCTACCATATTCCACTCCCCT
ACTCTATTCTGCAGTATTCATTTTCCCTATCGATCTATTTTTCTTATTGTTTAACCTCTTACAAAAATATGAAACACTTG
AAGGCGAAAGAAATGAAATCCTTCACCGGATTGTCACTTTAAACAATACACAAAATGCTCGTTATGTGAAATCAAAACTC
AACTCAGTCAATACCGAAGAATCGCTTGCGAAATTGGAATCCTGGATGCGAGTAACCAAACCCTATTTGGATGAAAAGTT
AGATTTAGAAATTGCCTCACTTGCCATTGGTTTAACTGTCCAACAAACATCGGAACTGCTCAATTCCAAACTAGGAGTTA
GTTTCCGCAGTTATCTCAATGGATTTCGGATTGCCGATGCCAAAAAAATCTTAAAAGACAAACCGGATATGTCTATCCTT
TCGATTGCATATGCGACAGGTTTTGGCTCCAAAACTGCTTTCAATGTTGAATTTAAAAAAGCAACAGGTCAGAGTCCCGT
ACAATATAGACAATCCGGTGGTGAAAATAAAATCTAA

Upstream 100 bases:

>100_bases
CGATTTCAAAGAACCAACTATCTTTATTTTCACAAATGACGTCATTTGGCTTCGAGGGAAAACAAATGACGATGGGTTTG
CACAAGGAAGGATCCTTTCT

Downstream 100 bases:

>100_bases
CATCTATTAGGGGCCTAATACTAGTGACCCAAGATACACTTGATTTACCGCTGTGGCGCTGAGAGCCGAGCCAAAAACAC
GAAATCCATCAATGCCGCCG

Product: putative transcriptional factor

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Sensor Histidine Kinase; Diguanylate Cyclase; Helix-Turn-Helix Domain-Containing Protein; Adenylate/Guanylate Cyclase; Transcriptional Regulator Arac Family; Response Regulator; Regulatory Helix-Turn-Helix Protein AraC Family; Response Regulator Receiver; Lost Adherence Sensor LadS; Multi-Sensor Signal Transduction Multi-Kinase; Two-Component Sensor; Two-Component System Sensor Kinase; Helix-Turn-Helix AraC Type; Transcription Regulator; Integral Membrane Sensor Hybrid Histidine Kinase; Sensory Transduction Histidine Kinase; Signaling Protein With A Acyltransferase And GGDEF Domains; Periplasmic Sensor Hybrid Histidine Kinase; Sensor Histidine Kinase/Response Regulator; Response Regulator Receiver Protein

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MEWKALDFARLYYSEQSKEFKFIDTGDTIPKSKWILPESLYPSFPIPKQNSGDYFYIRIQSKSLISFPIRSLSERSLNKR
MIVETAITWLIIGVCAVMIVFALFYFFAFGLSEFFFYAGYVVCTVLWYNGQYGNAYDVLWPESPWWQNKAILVFSTLGIP
FSFQFVRMFLNTKVNNPRIDKILLIMGIIAMFCIPAILTSYTTKIFSRIATYIYLISIPIILGTALKNYIKGEKQILFFL
LSWGSYFIVSYNTMFYFLGILPYSTPLLYSAVFIFPIDLFFLLFNLLQKYETLEGERNEILHRIVTLNNTQNARYVKSKL
NSVNTEESLAKLESWMRVTKPYLDEKLDLEIASLAIGLTVQQTSELLNSKLGVSFRSYLNGFRIADAKKILKDKPDMSIL
SIAYATGFGSKTAFNVEFKKATGQSPVQYRQSGGENKI

Sequences:

>Translated_438_residues
MEWKALDFARLYYSEQSKEFKFIDTGDTIPKSKWILPESLYPSFPIPKQNSGDYFYIRIQSKSLISFPIRSLSERSLNKR
MIVETAITWLIIGVCAVMIVFALFYFFAFGLSEFFFYAGYVVCTVLWYNGQYGNAYDVLWPESPWWQNKAILVFSTLGIP
FSFQFVRMFLNTKVNNPRIDKILLIMGIIAMFCIPAILTSYTTKIFSRIATYIYLISIPIILGTALKNYIKGEKQILFFL
LSWGSYFIVSYNTMFYFLGILPYSTPLLYSAVFIFPIDLFFLLFNLLQKYETLEGERNEILHRIVTLNNTQNARYVKSKL
NSVNTEESLAKLESWMRVTKPYLDEKLDLEIASLAIGLTVQQTSELLNSKLGVSFRSYLNGFRIADAKKILKDKPDMSIL
SIAYATGFGSKTAFNVEFKKATGQSPVQYRQSGGENKI
>Mature_438_residues
MEWKALDFARLYYSEQSKEFKFIDTGDTIPKSKWILPESLYPSFPIPKQNSGDYFYIRIQSKSLISFPIRSLSERSLNKR
MIVETAITWLIIGVCAVMIVFALFYFFAFGLSEFFFYAGYVVCTVLWYNGQYGNAYDVLWPESPWWQNKAILVFSTLGIP
FSFQFVRMFLNTKVNNPRIDKILLIMGIIAMFCIPAILTSYTTKIFSRIATYIYLISIPIILGTALKNYIKGEKQILFFL
LSWGSYFIVSYNTMFYFLGILPYSTPLLYSAVFIFPIDLFFLLFNLLQKYETLEGERNEILHRIVTLNNTQNARYVKSKL
NSVNTEESLAKLESWMRVTKPYLDEKLDLEIASLAIGLTVQQTSELLNSKLGVSFRSYLNGFRIADAKKILKDKPDMSIL
SIAYATGFGSKTAFNVEFKKATGQSPVQYRQSGGENKI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50497; Mature: 50497

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWKALDFARLYYSEQSKEFKFIDTGDTIPKSKWILPESLYPSFPIPKQNSGDYFYIRIQ
CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
SKSLISFPIRSLSERSLNKRMIVETAITWLIIGVCAVMIVFALFYFFAFGLSEFFFYAGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVCTVLWYNGQYGNAYDVLWPESPWWQNKAILVFSTLGIPFSFQFVRMFLNTKVNNPRID
HHHHHHEECCCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHH
KILLIMGIIAMFCIPAILTSYTTKIFSRIATYIYLISIPIILGTALKNYIKGEKQILFFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSWGSYFIVSYNTMFYFLGILPYSTPLLYSAVFIFPIDLFFLLFNLLQKYETLEGERNEI
HHCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LHRIVTLNNTQNARYVKSKLNSVNTEESLAKLESWMRVTKPYLDEKLDLEIASLAIGLTV
HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH
QQTSELLNSKLGVSFRSYLNGFRIADAKKILKDKPDMSILSIAYATGFGSKTAFNVEFKK
HHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEC
ATGQSPVQYRQSGGENKI
CCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MEWKALDFARLYYSEQSKEFKFIDTGDTIPKSKWILPESLYPSFPIPKQNSGDYFYIRIQ
CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
SKSLISFPIRSLSERSLNKRMIVETAITWLIIGVCAVMIVFALFYFFAFGLSEFFFYAGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVCTVLWYNGQYGNAYDVLWPESPWWQNKAILVFSTLGIPFSFQFVRMFLNTKVNNPRID
HHHHHHEECCCCCCEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHH
KILLIMGIIAMFCIPAILTSYTTKIFSRIATYIYLISIPIILGTALKNYIKGEKQILFFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSWGSYFIVSYNTMFYFLGILPYSTPLLYSAVFIFPIDLFFLLFNLLQKYETLEGERNEI
HHCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LHRIVTLNNTQNARYVKSKLNSVNTEESLAKLESWMRVTKPYLDEKLDLEIASLAIGLTV
HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH
QQTSELLNSKLGVSFRSYLNGFRIADAKKILKDKPDMSILSIAYATGFGSKTAFNVEFKK
HHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEC
ATGQSPVQYRQSGGENKI
CCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA