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The map label for this gene is xerD [C]

Identifier: 183220599

GI number: 183220599

Start: 1257441

End: 1258337

Strand: Reverse

Name: xerD [C]

Synonym: LEPBI_I1205

Alternate gene names: 183220599

Gene position: 1258337-1257441 (Counterclockwise)

Preceding gene: 183220600

Following gene: 183220598

Centisome position: 34.96

GC content: 33.0

Gene sequence:

>897_bases
ATGGGTATGTTAAAAGATAAAATGATTTCCGATATGATAGTGCATGGTTATGCACAAAAGACAATACGAAGTTATACGTT
GTGTATGTCTAGGTTAGTAAGATACTTTCAAAAATCTCCTTTGGATTTGCAACCAATTGACATATATAATTTTTTTCTTA
ATTTACGACAATCAAACAAAACAGATTCTACTTTAGTGCTCTTTTATTGTGCTTTTTTGTTTTTTTATTCTCTTCGTGAT
CGAAAAGATATGTTGGAATTAGTTCCCTTCCCAAAACGAAAACGCAAAGCTGTTGCTGTATTTAGTCAAACAGAAGTTAC
AAACTTTCTCGGAAATTGTACGTCTGTGTGTGAAAAGTCTATTTTTACCTTACTTTATTCTTCTGGGATTCGAATTGGAG
AAGGGCTTAGCCTACAGTTAAGTGATATAGATTTTGAAAGAAAGGCTATCTTTATTCGTTCGGGGAAAGGTGGTCACGGG
AGGTATGCAATTTTAGCCGATAAAACAGCTTTGCTTTTAAGACAATACCTAGAAATTTATAATCCAAAATCGTATTTATT
CTTTTCACAAAAGGGAAAAAATATTCCCATCAGTCCTCGCACGATCCAAGCTGCTTTTCAAAAAATTCGAAACTTATCAA
AAATACAAAAATATGCTACAGTACATACTCTTAGGCATTCATTCGCTACCCATCTTTTGGAGGATGGTTATAGTTTGGTA
TACATCCAAAAACTATTAGGTCATGCTGATATCAAAAGTACAATGATATATTTGCATGTGAGTCCAGACTCTCTTTTGCA
AATTACAAGTCCGTTAGAAAAGATAGGTAATATCAAATTAGGGGTTTTTGAAAACCAACACCAATATGGATTCCAATTTC
AAAGAAGTTCATCTTAA

Upstream 100 bases:

>100_bases
AAAAATTGTCGATTTACTAAAAAAATGATAACAACCTAGATATACCATAAAATCATTTTAAATTCTTTTTATTCTCCTGT
ACATTCTGTCCTTTGTACTT

Downstream 100 bases:

>100_bases
AGTAAAAAGAGCCACTTTCGGAATTTGATTCGATGTTAAGAAATCAAACGGAAGTCGCCGTTGGATTCATCAAAATGATA
CTTTTTGTTTATGGATCCTA

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGMLKDKMISDMIVHGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFLFFYSLRD
RKDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVCEKSIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHG
RYAILADKTALLLRQYLEIYNPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLV
YIQKLLGHADIKSTMIYLHVSPDSLLQITSPLEKIGNIKLGVFENQHQYGFQFQRSSS

Sequences:

>Translated_298_residues
MGMLKDKMISDMIVHGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFLFFYSLRD
RKDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVCEKSIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHG
RYAILADKTALLLRQYLEIYNPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLV
YIQKLLGHADIKSTMIYLHVSPDSLLQITSPLEKIGNIKLGVFENQHQYGFQFQRSSS
>Mature_297_residues
GMLKDKMISDMIVHGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNKTDSTLVLFYCAFLFFYSLRDR
KDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVCEKSIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGR
YAILADKTALLLRQYLEIYNPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLVY
IQKLLGHADIKSTMIYLHVSPDSLLQITSPLEKIGNIKLGVFENQHQYGFQFQRSSS

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=275, Percent_Identity=27.2727272727273, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790244, Length=264, Percent_Identity=24.2424242424242, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34340; Mature: 34208

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMLKDKMISDMIVHGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
TDSTLVLFYCAFLFFYSLRDRKDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVCEKS
CCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHH
IFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEIY
HHHHHHHCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH
NPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLV
CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
YIQKLLGHADIKSTMIYLHVSPDSLLQITSPLEKIGNIKLGVFENQHQYGFQFQRSSS
HHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCCC
>Mature Secondary Structure 
GMLKDKMISDMIVHGYAQKTIRSYTLCMSRLVRYFQKSPLDLQPIDIYNFFLNLRQSNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
TDSTLVLFYCAFLFFYSLRDRKDMLELVPFPKRKRKAVAVFSQTEVTNFLGNCTSVCEKS
CCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHH
IFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEIY
HHHHHHHCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHH
NPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLLEDGYSLV
CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
YIQKLLGHADIKSTMIYLHVSPDSLLQITSPLEKIGNIKLGVFENQHQYGFQFQRSSS
HHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]