Definition Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence.
Accession NC_010602
Length 3,599,677

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The map label for this gene is yahD [C]

Identifier: 183220600

GI number: 183220600

Start: 1258410

End: 1259687

Strand: Reverse

Name: yahD [C]

Synonym: LEPBI_I1206

Alternate gene names: 183220600

Gene position: 1259687-1258410 (Counterclockwise)

Preceding gene: 183220601

Following gene: 183220599

Centisome position: 34.99

GC content: 36.46

Gene sequence:

>1278_bases
ATGAATAGAGACAAAAACCTTCCTGAGATGAACCCATTTCGCGGCGGATTGATTTCCATCATTCGTTTGTTTACTCCGCC
AATTTTGGCTTTTCTTGTGATCGTTTTTGTTCGTTATATATCCGGTGATGTTTCTTGGAAACGAAATCTCCTAGCCGCTT
CGTTTCTTTGTTATTATATTGCGGTCTCTGTTTTTGGAACCTTACGTGCTGCCTCTGCCGTAGAAGATATCCTTGGCGAA
GAAGACATCGTTGAAGATAAAACCTTAAGAATGAGAAGGGCAAGACATTCGATTCGTGTTTTCTTTTCTCTTTGGCTCGT
TGGTGGTGTTGCCATCCTCGCGGGTCTTTATGTTGGTATGACTAAAAATCGTTGGGACATGCCCATACCACTTCCTTCTT
TACAAATTTTGAGTTCGGTCATTTGGGCTATCCTTTCCTCTTTATTGTTGCAACTAATGAGTTTCCATAGAGGGCTTTTG
CTTACCAAAGGTGGATCCACAAAAGGATACATTGCACAGAGTATAACGATTTATGGATTTCTGATCTTACTTTTCCCTAT
TTATTTTGTTTTATATGCCGGGAATGGAAAAATTGTAAACATACCTTATTTGATAGCATTTACACTACCGACTAACTTGA
TTTTGGTGTATTTAATTCTTAAAAAATACAAATCTGTTCTCAGTATTTTGGGAGAGAATTCTACTTTTTTCTTCCATCCT
GATACAAAATACGCTGCCAAAAGGGCCTTCACTATTTTTTTATTAATATTTCTTTTGATTTCCTTATTCTTCTTAGATTA
TACACGAAGGAAAAAATTACTTTGGATTTACGCAGCAAGAGAAAACCATATTTTTCTATTTGATGCACTCCGCCTAACGG
GTGTGGACGTTAATGAAGTAGACGAACATAAATATACTCCACTTTTTTGGGCAATCCAAGGTGGGTCTTTGGATTTTGTA
AAATCCATCACAAAGAATGGAGCAAATTTAGAAGCATCCAATGAATTTGGCCAAACTCCTTTGATTGTGGCTGTTTTAGT
CAAAAATGAAACAATCGTCAGAGAATTAATTTCACTAGGATGTGACATCGATCGAGGAGATTCTATGGAAGGCCAAACTC
CCTTGATTTTAGCCGCAAGAGATGGAAGTCTGGAAATAGTAAAAATTTTATTAGAAAATAAGGCGAATCCCCTTCTCAAA
AATAAAAAGGGAGAAACTGCCTTAAGTTTAGCTATAGAAAATGGACATCAAAAAATTGTCGATTTACTAAAAAAATGA

Upstream 100 bases:

>100_bases
ATGCCTTCTCAAAAGTATTTGGGTAACGAAAAGCTAACAGCTGTTGCAAATTATATTTTGAATTTAAAAGACGAAGGTGC
CAAAGGGGTGGCAAAATAAT

Downstream 100 bases:

>100_bases
TAACAACCTAGATATACCATAAAATCATTTTAAATTCTTTTTATTCTCCTGTACATTCTGTCCTTTGTACTTATGGGTAT
GTTAAAAGATAAAATGATTT

Product: ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNRDKNLPEMNPFRGGLISIIRLFTPPILAFLVIVFVRYISGDVSWKRNLLAASFLCYYIAVSVFGTLRAASAVEDILGE
EDIVEDKTLRMRRARHSIRVFFSLWLVGGVAILAGLYVGMTKNRWDMPIPLPSLQILSSVIWAILSSLLLQLMSFHRGLL
LTKGGSTKGYIAQSITIYGFLILLFPIYFVLYAGNGKIVNIPYLIAFTLPTNLILVYLILKKYKSVLSILGENSTFFFHP
DTKYAAKRAFTIFLLIFLLISLFFLDYTRRKKLLWIYAARENHIFLFDALRLTGVDVNEVDEHKYTPLFWAIQGGSLDFV
KSITKNGANLEASNEFGQTPLIVAVLVKNETIVRELISLGCDIDRGDSMEGQTPLILAARDGSLEIVKILLENKANPLLK
NKKGETALSLAIENGHQKIVDLLKK

Sequences:

>Translated_425_residues
MNRDKNLPEMNPFRGGLISIIRLFTPPILAFLVIVFVRYISGDVSWKRNLLAASFLCYYIAVSVFGTLRAASAVEDILGE
EDIVEDKTLRMRRARHSIRVFFSLWLVGGVAILAGLYVGMTKNRWDMPIPLPSLQILSSVIWAILSSLLLQLMSFHRGLL
LTKGGSTKGYIAQSITIYGFLILLFPIYFVLYAGNGKIVNIPYLIAFTLPTNLILVYLILKKYKSVLSILGENSTFFFHP
DTKYAAKRAFTIFLLIFLLISLFFLDYTRRKKLLWIYAARENHIFLFDALRLTGVDVNEVDEHKYTPLFWAIQGGSLDFV
KSITKNGANLEASNEFGQTPLIVAVLVKNETIVRELISLGCDIDRGDSMEGQTPLILAARDGSLEIVKILLENKANPLLK
NKKGETALSLAIENGHQKIVDLLKK
>Mature_425_residues
MNRDKNLPEMNPFRGGLISIIRLFTPPILAFLVIVFVRYISGDVSWKRNLLAASFLCYYIAVSVFGTLRAASAVEDILGE
EDIVEDKTLRMRRARHSIRVFFSLWLVGGVAILAGLYVGMTKNRWDMPIPLPSLQILSSVIWAILSSLLLQLMSFHRGLL
LTKGGSTKGYIAQSITIYGFLILLFPIYFVLYAGNGKIVNIPYLIAFTLPTNLILVYLILKKYKSVLSILGENSTFFFHP
DTKYAAKRAFTIFLLIFLLISLFFLDYTRRKKLLWIYAARENHIFLFDALRLTGVDVNEVDEHKYTPLFWAIQGGSLDFV
KSITKNGANLEASNEFGQTPLIVAVLVKNETIVRELISLGCDIDRGDSMEGQTPLILAARDGSLEIVKILLENKANPLLK
NKKGETALSLAIENGHQKIVDLLKK

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI32967601, Length=150, Percent_Identity=32.6666666666667, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI70780357, Length=147, Percent_Identity=34.0136054421769, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI70780359, Length=147, Percent_Identity=34.0136054421769, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI70780355, Length=147, Percent_Identity=34.0136054421769, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI70780353, Length=147, Percent_Identity=34.0136054421769, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI215598574, Length=147, Percent_Identity=34.0136054421769, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI46519147, Length=147, Percent_Identity=37.4149659863946, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI37620163, Length=147, Percent_Identity=37.4149659863946, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI46519154, Length=147, Percent_Identity=37.4149659863946, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI46519151, Length=147, Percent_Identity=37.4149659863946, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI38683816, Length=147, Percent_Identity=38.0952380952381, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI38683807, Length=147, Percent_Identity=38.0952380952381, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI89363047, Length=136, Percent_Identity=36.0294117647059, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI52426737, Length=130, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI52426735, Length=130, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI188595682, Length=130, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI55741641, Length=182, Percent_Identity=29.6703296703297, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI62988328, Length=180, Percent_Identity=29.4444444444444, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI55742857, Length=124, Percent_Identity=38.7096774193548, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI268607595, Length=162, Percent_Identity=31.4814814814815, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI22208951, Length=147, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI7705831, Length=147, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI17864094, Length=150, Percent_Identity=35.3333333333333, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI255982572, Length=147, Percent_Identity=32.6530612244898, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI41327752, Length=146, Percent_Identity=34.2465753424658, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI38569428, Length=133, Percent_Identity=35.3383458646617, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI38569426, Length=133, Percent_Identity=35.3383458646617, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI148596917, Length=147, Percent_Identity=31.2925170068027, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI70995241, Length=120, Percent_Identity=35, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI34304379, Length=274, Percent_Identity=24.4525547445255, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI34304381, Length=274, Percent_Identity=24.4525547445255, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI30425444, Length=148, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI16975496, Length=155, Percent_Identity=33.5483870967742, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI41327754, Length=210, Percent_Identity=30.4761904761905, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI212549546, Length=172, Percent_Identity=30.8139534883721, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI310123185, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI310124281, Length=172, Percent_Identity=31.3953488372093, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI224465233, Length=171, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI4506217, Length=148, Percent_Identity=33.1081081081081, Blast_Score=66, Evalue=8e-11,
Organism=Homo sapiens, GI153791352, Length=172, Percent_Identity=31.3953488372093, Blast_Score=66, Evalue=8e-11,
Organism=Homo sapiens, GI134133226, Length=172, Percent_Identity=31.3953488372093, Blast_Score=66, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI25145251, Length=149, Percent_Identity=30.8724832214765, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17542700, Length=149, Percent_Identity=30.8724832214765, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71981389, Length=149, Percent_Identity=30.8724832214765, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71981411, Length=149, Percent_Identity=30.8724832214765, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71981414, Length=149, Percent_Identity=30.8724832214765, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646035, Length=139, Percent_Identity=37.410071942446, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646031, Length=139, Percent_Identity=37.410071942446, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646033, Length=139, Percent_Identity=37.410071942446, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330478, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330480, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330482, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281363919, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330474, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573593, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45551135, Length=151, Percent_Identity=33.7748344370861, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24650843, Length=149, Percent_Identity=33.5570469798658, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330476, Length=151, Percent_Identity=33.7748344370861, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45550479, Length=151, Percent_Identity=33.7748344370861, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24581260, Length=214, Percent_Identity=30.8411214953271, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24581258, Length=214, Percent_Identity=30.8411214953271, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28571867, Length=146, Percent_Identity=33.5616438356164, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571865, Length=146, Percent_Identity=33.5616438356164, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161082085, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082106, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082096, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082081, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082110, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082099, Length=147, Percent_Identity=31.9727891156463, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161082089, Length=147, Percent_Identity=31.9727891156463, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI161078304, Length=150, Percent_Identity=34, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281359521, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281359519, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28558752, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28558750, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28558756, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28558754, Length=146, Percent_Identity=32.8767123287671, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161082092, Length=129, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 47815; Mature: 47815

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNRDKNLPEMNPFRGGLISIIRLFTPPILAFLVIVFVRYISGDVSWKRNLLAASFLCYYI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AVSVFGTLRAASAVEDILGEEDIVEDKTLRMRRARHSIRVFFSLWLVGGVAILAGLYVGM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TKNRWDMPIPLPSLQILSSVIWAILSSLLLQLMSFHRGLLLTKGGSTKGYIAQSITIYGF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
LILLFPIYFVLYAGNGKIVNIPYLIAFTLPTNLILVYLILKKYKSVLSILGENSTFFFHP
HHHHHHHHHHHCCCCCCEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DTKYAAKRAFTIFLLIFLLISLFFLDYTRRKKLLWIYAARENHIFLFDALRLTGVDVNEV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEHHHCCCCCCCC
DEHKYTPLFWAIQGGSLDFVKSITKNGANLEASNEFGQTPLIVAVLVKNETIVRELISLG
CCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHC
CDIDRGDSMEGQTPLILAARDGSLEIVKILLENKANPLLKNKKGETALSLAIENGHQKIV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHH
DLLKK
HHHCC
>Mature Secondary Structure
MNRDKNLPEMNPFRGGLISIIRLFTPPILAFLVIVFVRYISGDVSWKRNLLAASFLCYYI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AVSVFGTLRAASAVEDILGEEDIVEDKTLRMRRARHSIRVFFSLWLVGGVAILAGLYVGM
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TKNRWDMPIPLPSLQILSSVIWAILSSLLLQLMSFHRGLLLTKGGSTKGYIAQSITIYGF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
LILLFPIYFVLYAGNGKIVNIPYLIAFTLPTNLILVYLILKKYKSVLSILGENSTFFFHP
HHHHHHHHHHHCCCCCCEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DTKYAAKRAFTIFLLIFLLISLFFLDYTRRKKLLWIYAARENHIFLFDALRLTGVDVNEV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEHHHCCCCCCCC
DEHKYTPLFWAIQGGSLDFVKSITKNGANLEASNEFGQTPLIVAVLVKNETIVRELISLG
CCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHC
CDIDRGDSMEGQTPLILAARDGSLEIVKILLENKANPLLKNKKGETALSLAIENGHQKIV
CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHH
DLLKK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA