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The map label for this gene is 182680496

Identifier: 182680496

GI number: 182680496

Start: 4076135

End: 4077568

Strand: Reverse

Name: 182680496

Synonym: Bind_3598

Alternate gene names: NA

Gene position: 4077568-4076135 (Counterclockwise)

Preceding gene: 182680498

Following gene: 182680495

Centisome position: 97.78

GC content: 57.39

Gene sequence:

>1434_bases
ATGCGTCAAAAATTTTTTGCCGGAACCCAGATCCGACGCCTCAGGGAGGCTCACGCCCTGACTCAAGGCGCCTTTGCCGA
GCGTCTTGGGATCTCGCCTAGTTATTTGAATCAGATTGAAAATAACCAGCGTCCCCTTTCCGCCTCTGTCCTGCTCAGTC
TCGCTCAATCCTTTTCCGTCGATCTCAGCGAATTTGCGCAGGAAGATACCGATCGCCTCATCGGCGATCTCAAGGAAGCC
CTGGCCGATCCGCTCTTTTCAGGACTGACGCCCAGTGGTCAGGATCTGAAGATGATCGCTGGCAATGCGTCCTGGTTCGC
ACATGCCTTTCTCCAATTGCATACGGCTTTTCGCCGCACCAATGAACGCATGCAGACGATGGACGATGAGGACATCCTCC
ATCGGCCGGCGGGCACGGCCTCGGATTCCGGCATGCTCTTGCCTTACGAGGAAGTCCGGGATTTCTTCCATTATCGCGGC
AATTACATCGATGTGCTCGATGTCGCGGCTGAGCGAATCGCCGAGGAAGAACTCGGCATCGGCGAGGGGACGAAAGTCAA
CGAACTCGCGGATTATCTCTTGCGCCGCCATGCCGTGCGCGTCGAATGCGAAAAGGTCGAGCCGACCTCGCGCTTCATGC
GCCGCTATGATCGCGTCGGCCGCGTGCTCTCGATCCGGGATGGTCTCGATCCGACGAGCCGGGCGTTTTTGATTGCGCAT
CAGATCGCCCATCTTGAGGAAGGCGATACATTCGAGGCGATCATCGCCGAGGCCGGTTTCCGGGCGAGCGGCGCGGCCGG
CATCACCAGGATCGCGCTTGCCAATTATTTCGCCGGCGCCTTGATCATGCCTTATGAGCGTTTCCTGAATGCGGCGCGTT
CGACACGTTATGATGTCGAACGCCTCTGCTTGATGTTCGGTGCGAGTTTCGAACAGATCGGCCATCGTCTGTCCACCCTG
CAAAGGCCGAATGCGCGCGGTGTCCCTTTCTATTTCGTGCGCATCGATCGGGCGGGAAATATTCTGAAACGTCATTCATC
GACGCGTTTCCAATTTGCTCGTTTCGGTGGCACCTGTCCTTTATGGAATGTGCATGAGGCATTCGAAATGCCGAACCGCA
CCTTGGTCCAGATCGCCGAAATGCCGGATGGCGTGCGCTATTTGTGTGTCGCCCGTTCAGCCACCAAATCGGTTGGCAGC
CATCTCGCGCAACCCCGTCATTACGCGCTCGGCATTGGATGCGAGATCAGCTATGCGCATGATGTTGTCTATTCCGACGC
CATCGATCTAAAAACCACTCCGGTCGCCAAGATCGGTGTCAGTTGCCGTATCTGCGAACGCACCGATTGTCCGCAACGGG
CAGCGCCGCCGATCGATCGCGGCCTTCTCGTCGATCCGGACCGCCGCGATTTCGTTCCTTTCCGGTTTACATGA

Upstream 100 bases:

>100_bases
CGTTAGGTAGGCTTTACAAAAAACCAGGGGATGAATCCCTAAAAAAAGGGCCGATTTGCAAATTGCTTGCAAATGACCTT
CGCAATGTTACAAATGCGAA

Downstream 100 bases:

>100_bases
ATCCCTTCCCGGCCTCTCCCATCCGCAGTCTGTTTATTCTCGGCGGCGCACGCTCCGGCAAGAGTTTTTACGCACAAAGA
CTGGCAGAAACCTCCGGCTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEFAQEDTDRLIGDLKEA
LADPLFSGLTPSGQDLKMIAGNASWFAHAFLQLHTAFRRTNERMQTMDDEDILHRPAGTASDSGMLLPYEEVRDFFHYRG
NYIDVLDVAAERIAEEELGIGEGTKVNELADYLLRRHAVRVECEKVEPTSRFMRRYDRVGRVLSIRDGLDPTSRAFLIAH
QIAHLEEGDTFEAIIAEAGFRASGAAGITRIALANYFAGALIMPYERFLNAARSTRYDVERLCLMFGASFEQIGHRLSTL
QRPNARGVPFYFVRIDRAGNILKRHSSTRFQFARFGGTCPLWNVHEAFEMPNRTLVQIAEMPDGVRYLCVARSATKSVGS
HLAQPRHYALGIGCEISYAHDVVYSDAIDLKTTPVAKIGVSCRICERTDCPQRAAPPIDRGLLVDPDRRDFVPFRFT

Sequences:

>Translated_477_residues
MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEFAQEDTDRLIGDLKEA
LADPLFSGLTPSGQDLKMIAGNASWFAHAFLQLHTAFRRTNERMQTMDDEDILHRPAGTASDSGMLLPYEEVRDFFHYRG
NYIDVLDVAAERIAEEELGIGEGTKVNELADYLLRRHAVRVECEKVEPTSRFMRRYDRVGRVLSIRDGLDPTSRAFLIAH
QIAHLEEGDTFEAIIAEAGFRASGAAGITRIALANYFAGALIMPYERFLNAARSTRYDVERLCLMFGASFEQIGHRLSTL
QRPNARGVPFYFVRIDRAGNILKRHSSTRFQFARFGGTCPLWNVHEAFEMPNRTLVQIAEMPDGVRYLCVARSATKSVGS
HLAQPRHYALGIGCEISYAHDVVYSDAIDLKTTPVAKIGVSCRICERTDCPQRAAPPIDRGLLVDPDRRDFVPFRFT
>Mature_477_residues
MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEFAQEDTDRLIGDLKEA
LADPLFSGLTPSGQDLKMIAGNASWFAHAFLQLHTAFRRTNERMQTMDDEDILHRPAGTASDSGMLLPYEEVRDFFHYRG
NYIDVLDVAAERIAEEELGIGEGTKVNELADYLLRRHAVRVECEKVEPTSRFMRRYDRVGRVLSIRDGLDPTSRAFLIAH
QIAHLEEGDTFEAIIAEAGFRASGAAGITRIALANYFAGALIMPYERFLNAARSTRYDVERLCLMFGASFEQIGHRLSTL
QRPNARGVPFYFVRIDRAGNILKRHSSTRFQFARFGGTCPLWNVHEAFEMPNRTLVQIAEMPDGVRYLCVARSATKSVGS
HLAQPRHYALGIGCEISYAHDVVYSDAIDLKTTPVAKIGVSCRICERTDCPQRAAPPIDRGLLVDPDRRDFVPFRFT

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 53613; Mature: 53613

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC
DLSEFAQEDTDRLIGDLKEALADPLFSGLTPSGQDLKMIAGNASWFAHAFLQLHTAFRRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
NERMQTMDDEDILHRPAGTASDSGMLLPYEEVRDFFHYRGNYIDVLDVAAERIAEEELGI
HHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCC
GEGTKVNELADYLLRRHAVRVECEKVEPTSRFMRRYDRVGRVLSIRDGLDPTSRAFLIAH
CCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
QIAHLEEGDTFEAIIAEAGFRASGAAGITRIALANYFAGALIMPYERFLNAARSTRYDVE
HHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLCLMFGASFEQIGHRLSTLQRPNARGVPFYFVRIDRAGNILKRHSSTRFQFARFGGTCP
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHCCCCCC
LWNVHEAFEMPNRTLVQIAEMPDGVRYLCVARSATKSVGSHLAQPRHYALGIGCEISYAH
CCCHHHHHHCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECEEEEHHH
DVVYSDAIDLKTTPVAKIGVSCRICERTDCPQRAAPPIDRGLLVDPDRRDFVPFRFT
HHHHCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
>Mature Secondary Structure
MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCC
DLSEFAQEDTDRLIGDLKEALADPLFSGLTPSGQDLKMIAGNASWFAHAFLQLHTAFRRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
NERMQTMDDEDILHRPAGTASDSGMLLPYEEVRDFFHYRGNYIDVLDVAAERIAEEELGI
HHHHHHCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCC
GEGTKVNELADYLLRRHAVRVECEKVEPTSRFMRRYDRVGRVLSIRDGLDPTSRAFLIAH
CCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
QIAHLEEGDTFEAIIAEAGFRASGAAGITRIALANYFAGALIMPYERFLNAARSTRYDVE
HHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLCLMFGASFEQIGHRLSTLQRPNARGVPFYFVRIDRAGNILKRHSSTRFQFARFGGTCP
HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHCCCCCEEHHHCCCCCC
LWNVHEAFEMPNRTLVQIAEMPDGVRYLCVARSATKSVGSHLAQPRHYALGIGCEISYAH
CCCHHHHHHCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEECEEEEHHH
DVVYSDAIDLKTTPVAKIGVSCRICERTDCPQRAAPPIDRGLLVDPDRRDFVPFRFT
HHHHCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]