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The map label for this gene is ybeQ [H]

Identifier: 182680421

GI number: 182680421

Start: 3999678

End: 4000841

Strand: Reverse

Name: ybeQ [H]

Synonym: Bind_3521

Alternate gene names: 182680421

Gene position: 4000841-3999678 (Counterclockwise)

Preceding gene: 182680422

Following gene: 182680420

Centisome position: 95.94

GC content: 60.82

Gene sequence:

>1164_bases
ATGAACAGGGTCAAAAGCGGCTGCGAGCATTCTTGCAAGAGTCATTGGATGAGAAACAGGGTTTTGCCGGTGAGCCTGGC
CTTCAGTCTTGCCTTGCTCAGTGCTGGAATGGATGCGCGGGCACAAGGACAAAAGGCTGGCAAGAGTGTCCCTCTCGCGC
CGTCTGAGGCTCCCCTGATCTCTATGCCCTTGAGCAATCCCTTGAGCGCACCCATGGGCGCTCCTTGGGGCTCTTCCATG
TTGATGCCTAAAGCGACCTCGTCACGGCAAGAGGGCGTAACGCTGGCCTCGCCCATCGATACGCCCGACAAGCCGGGCGA
GGGGCGCCCTGACGGTGATCTCGCCTTTGGAGCATTTCAACGCGGCCATTACACGACGGCCCTGCGCGAGGCCATGAAGC
GCATCGATGCAAATCCCAATGATGGGGCCGCCATGACTCTCATGGGCGAGCTTTATAGCCAGGGGCTGGGCGTGAGACGC
GACGCGACCGAGGCGGCGCGGTGGTACAAGCTCGCCGCTGACCGGGGTGATCGGCAGGGCATATTCGCGCTCGCCAGCGC
CAAAATGCGTGGGGACGGCGTGCCGGAAGACCGGCCGGGCGCCAAAATCCTCTTCACCCAGGCGGCCGAGAAAGATCATG
CCGGCGCTCTCTATAATCTCGGCATTATGGCGATCGAGCATAATGGCGTCGCCTCGGATTTCGTGACGGCGGCGCGTGAT
TTCGAAAAATCCGCCAAGCTCGGCGATGCGGCATCGGCCTATGCCTTGGGGCTCCTCTATCGCAACGGCAATGGCGTCGA
AAAGGACGAGGCCCGCGCCGCGTTCTGGATCGGCCAGGCGGCGGATAATGGCAATATCGAGGGCCAGATCGAATATGCGA
TCATGCTGTTCAATGGCATTGGTGTCGAAAAGAATGAGGCGGCGGCCGCCAAATATTTTCTGAAGGCTGCGGTGCAGAAC
AATCCCGTCGCGCAAAATCGCCTGGCGCGACTGCTGATTGCCGGCCGGGGCGTGGCGCCCAATCCCGTCGAAGCGATGAA
ATGGCATTTGCTGGCACGCACCGCGGGCCTCAAGGACGCATGGCTTGACGCGGAATTGAACAAATTATCGCCCGATCAGC
GCAAGGCGGTTGAGGCGGCGCTGCGCCAATATGTCAGCAATTGA

Upstream 100 bases:

>100_bases
TTGCGCTTGGCCGTATCGTCTGGGAGGATCCGCGCGGTCCCGCTGCCGTCATTGCCGAGGCCATGGAAAAATGCACTTCG
AGCCCCATGCCCGCCCGATG

Downstream 100 bases:

>100_bases
CCCGAGCCGATGGGCTCTTTTGGTCAATAAAGAAAAGTAAACAGGATATATTGCGATGAAATGTCGCTTATTGCTTCCTG
TTGCGCCTCGCGAAGAGCTT

Product: Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MNRVKSGCEHSCKSHWMRNRVLPVSLAFSLALLSAGMDARAQGQKAGKSVPLAPSEAPLISMPLSNPLSAPMGAPWGSSM
LMPKATSSRQEGVTLASPIDTPDKPGEGRPDGDLAFGAFQRGHYTTALREAMKRIDANPNDGAAMTLMGELYSQGLGVRR
DATEAARWYKLAADRGDRQGIFALASAKMRGDGVPEDRPGAKILFTQAAEKDHAGALYNLGIMAIEHNGVASDFVTAARD
FEKSAKLGDAASAYALGLLYRNGNGVEKDEARAAFWIGQAADNGNIEGQIEYAIMLFNGIGVEKNEAAAAKYFLKAAVQN
NPVAQNRLARLLIAGRGVAPNPVEAMKWHLLARTAGLKDAWLDAELNKLSPDQRKAVEAALRQYVSN

Sequences:

>Translated_387_residues
MNRVKSGCEHSCKSHWMRNRVLPVSLAFSLALLSAGMDARAQGQKAGKSVPLAPSEAPLISMPLSNPLSAPMGAPWGSSM
LMPKATSSRQEGVTLASPIDTPDKPGEGRPDGDLAFGAFQRGHYTTALREAMKRIDANPNDGAAMTLMGELYSQGLGVRR
DATEAARWYKLAADRGDRQGIFALASAKMRGDGVPEDRPGAKILFTQAAEKDHAGALYNLGIMAIEHNGVASDFVTAARD
FEKSAKLGDAASAYALGLLYRNGNGVEKDEARAAFWIGQAADNGNIEGQIEYAIMLFNGIGVEKNEAAAAKYFLKAAVQN
NPVAQNRLARLLIAGRGVAPNPVEAMKWHLLARTAGLKDAWLDAELNKLSPDQRKAVEAALRQYVSN
>Mature_387_residues
MNRVKSGCEHSCKSHWMRNRVLPVSLAFSLALLSAGMDARAQGQKAGKSVPLAPSEAPLISMPLSNPLSAPMGAPWGSSM
LMPKATSSRQEGVTLASPIDTPDKPGEGRPDGDLAFGAFQRGHYTTALREAMKRIDANPNDGAAMTLMGELYSQGLGVRR
DATEAARWYKLAADRGDRQGIFALASAKMRGDGVPEDRPGAKILFTQAAEKDHAGALYNLGIMAIEHNGVASDFVTAARD
FEKSAKLGDAASAYALGLLYRNGNGVEKDEARAAFWIGQAADNGNIEGQIEYAIMLFNGIGVEKNEAAAAKYFLKAAVQN
NPVAQNRLARLLIAGRGVAPNPVEAMKWHLLARTAGLKDAWLDAELNKLSPDQRKAVEAALRQYVSN

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=175, Percent_Identity=33.1428571428571, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI19923669, Length=178, Percent_Identity=31.4606741573034, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87081769, Length=231, Percent_Identity=32.034632034632, Blast_Score=92, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21355295, Length=194, Percent_Identity=34.5360824742268, Blast_Score=85, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41344; Mature: 41344

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVKSGCEHSCKSHWMRNRVLPVSLAFSLALLSAGMDARAQGQKAGKSVPLAPSEAPLI
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEE
SMPLSNPLSAPMGAPWGSSMLMPKATSSRQEGVTLASPIDTPDKPGEGRPDGDLAFGAFQ
ECCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCEEEHHHC
RGHYTTALREAMKRIDANPNDGAAMTLMGELYSQGLGVRRDATEAARWYKLAADRGDRQG
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
IFALASAKMRGDGVPEDRPGAKILFTQAAEKDHAGALYNLGIMAIEHNGVASDFVTAARD
EEEEEHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEECEEEEEECCCCHHHHHHHHHH
FEKSAKLGDAASAYALGLLYRNGNGVEKDEARAAFWIGQAADNGNIEGQIEYAIMLFNGI
HHHHHCCCCHHHHHEEEEEEECCCCCCHHHCCEEEEEEECCCCCCCCEEEEEEEEEEECC
GVEKNEAAAAKYFLKAAVQNNPVAQNRLARLLIAGRGVAPNPVEAMKWHLLARTAGLKDA
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH
WLDAELNKLSPDQRKAVEAALRQYVSN
HHCCHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRVKSGCEHSCKSHWMRNRVLPVSLAFSLALLSAGMDARAQGQKAGKSVPLAPSEAPLI
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEE
SMPLSNPLSAPMGAPWGSSMLMPKATSSRQEGVTLASPIDTPDKPGEGRPDGDLAFGAFQ
ECCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCEEEHHHC
RGHYTTALREAMKRIDANPNDGAAMTLMGELYSQGLGVRRDATEAARWYKLAADRGDRQG
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
IFALASAKMRGDGVPEDRPGAKILFTQAAEKDHAGALYNLGIMAIEHNGVASDFVTAARD
EEEEEHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEECEEEEEECCCCHHHHHHHHHH
FEKSAKLGDAASAYALGLLYRNGNGVEKDEARAAFWIGQAADNGNIEGQIEYAIMLFNGI
HHHHHCCCCHHHHHEEEEEEECCCCCCHHHCCEEEEEEECCCCCCCCEEEEEEEEEEECC
GVEKNEAAAAKYFLKAAVQNNPVAQNRLARLLIAGRGVAPNPVEAMKWHLLARTAGLKDA
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH
WLDAELNKLSPDQRKAVEAALRQYVSN
HHCCHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]