Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 182680405

GI number: 182680405

Start: 3981603

End: 3982694

Strand: Reverse

Name: yrrC [H]

Synonym: Bind_3505

Alternate gene names: 182680405

Gene position: 3982694-3981603 (Counterclockwise)

Preceding gene: 182680412

Following gene: 182680403

Centisome position: 95.5

GC content: 61.36

Gene sequence:

>1092_bases
ATGGATTGGTCGCCGCAACAGGACGCGGCTCTGCGGGCGGTTGCAGCCTGGCTGAAGCGCGGCGAGCCTCAGGTGTTTCG
CCTGTTCGGTTATGCCGGCACCGGCAAGACCACGCTCGCGCGCCGGATCGCCGAGGATCTCGACGAGACGGTCGCCTTTG
CCGCCTATACCGGCAAGGCGGCTCTGGTTCTGCGCTCCAAGGGCTGCGAGGACGCCCGCACCATCCATAGTCTGATCTAT
CGCAGCCGGGGCGTTGAGGCGGAAACACCGTCCTTCGTGCTCAATGAGGAAAGCCCCGTCGCCAAGGTCGGGCTCGTCGT
CATCGATGAATGTTCCATGGTCGATGAAGAATTGGGCCGCGACCTGCTCTCTTTCGGCAAACCGGTGCTGGTTCTGGGCG
ATCCGGCGCAATTGCCGCCGGTCAAGGGAGGTGGCTTCTTCACCGAGGGTGAACCAGACATCATGCTGACCGATGTGCAT
CGGCAGGCGGCGGATAATCCGATCATCCATATGTCGATGCTCATCCGCGAGGGCGGGACCCTGCCTTATGGGCGTTATGG
CGAGAGCATGGTGATCGGCCGCGACGCCATTGATGCGGGGCAAGTGACCAGGGCCGATCAGGTGCTGGTCGGCCTCAACC
GCACGCGGCGCGCCTATAACAAGCGTCTGCGGGAATTATTCGGCCATGCGGAGCCCATGCCGGAGGTGGGCGACAAGCTC
GTCTGTCTGCGCAACGACAAGACCAAGGGTTTGTTGAACGGCGGGATCTGGATGGTCAAGGCGAATGCCGGGCTGCGCAA
GAAGAAGCTGCAAATCGATGCCGTGCCCGAGGAGGATCAAACGCGCCGGCCGCTCCGGCTCTCAGTGCTTCCGGATTTCT
TTGAAGGGACGGAAGAAAATTTGACCTATCAGCAGCGCCGCACCTCGGATGAATTTGATTACGGCTACGCCCTGACGGTC
CACAAAGCGCAAGGCTCGCAATGGAACCGGCTCGTTTTGTTTGATGAAAGCTTCGCCTTTCGCGAGCATCGCAGCCGCTG
GCTCTATACCGGGATCACGCGTGCGGCAGAACATCTGGTGATGGTGGTCTAG

Upstream 100 bases:

>100_bases
GTGGTGGAAAAATCTGACGCTTGAGAGCCAAGCGTCAGATTTTATCCATCAGGGAGCGGCCTTTCAAAGCGCTCACTTCT
CACCCAAAGCGGAGCCCTGG

Downstream 100 bases:

>100_bases
TATCCACCCTCATTGAAGCACGTCTCGTCGCGGTTCAATGAGGACAAGTGGATACGGTTTAAAAATCGACGTATCGAGAA
TCTGTGATTCTCGATACGTG

Product: putative deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MDWSPQQDAALRAVAAWLKRGEPQVFRLFGYAGTGKTTLARRIAEDLDETVAFAAYTGKAALVLRSKGCEDARTIHSLIY
RSRGVEAETPSFVLNEESPVAKVGLVVIDECSMVDEELGRDLLSFGKPVLVLGDPAQLPPVKGGGFFTEGEPDIMLTDVH
RQAADNPIIHMSMLIREGGTLPYGRYGESMVIGRDAIDAGQVTRADQVLVGLNRTRRAYNKRLRELFGHAEPMPEVGDKL
VCLRNDKTKGLLNGGIWMVKANAGLRKKKLQIDAVPEEDQTRRPLRLSVLPDFFEGTEENLTYQQRRTSDEFDYGYALTV
HKAQGSQWNRLVLFDESFAFREHRSRWLYTGITRAAEHLVMVV

Sequences:

>Translated_363_residues
MDWSPQQDAALRAVAAWLKRGEPQVFRLFGYAGTGKTTLARRIAEDLDETVAFAAYTGKAALVLRSKGCEDARTIHSLIY
RSRGVEAETPSFVLNEESPVAKVGLVVIDECSMVDEELGRDLLSFGKPVLVLGDPAQLPPVKGGGFFTEGEPDIMLTDVH
RQAADNPIIHMSMLIREGGTLPYGRYGESMVIGRDAIDAGQVTRADQVLVGLNRTRRAYNKRLRELFGHAEPMPEVGDKL
VCLRNDKTKGLLNGGIWMVKANAGLRKKKLQIDAVPEEDQTRRPLRLSVLPDFFEGTEENLTYQQRRTSDEFDYGYALTV
HKAQGSQWNRLVLFDESFAFREHRSRWLYTGITRAAEHLVMVV
>Mature_363_residues
MDWSPQQDAALRAVAAWLKRGEPQVFRLFGYAGTGKTTLARRIAEDLDETVAFAAYTGKAALVLRSKGCEDARTIHSLIY
RSRGVEAETPSFVLNEESPVAKVGLVVIDECSMVDEELGRDLLSFGKPVLVLGDPAQLPPVKGGGFFTEGEPDIMLTDVH
RQAADNPIIHMSMLIREGGTLPYGRYGESMVIGRDAIDAGQVTRADQVLVGLNRTRRAYNKRLRELFGHAEPMPEVGDKL
VCLRNDKTKGLLNGGIWMVKANAGLRKKKLQIDAVPEEDQTRRPLRLSVLPDFFEGTEENLTYQQRRTSDEFDYGYALTV
HKAQGSQWNRLVLFDESFAFREHRSRWLYTGITRAAEHLVMVV

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 40595; Mature: 40595

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSPQQDAALRAVAAWLKRGEPQVFRLFGYAGTGKTTLARRIAEDLDETVAFAAYTGKA
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEECCCE
ALVLRSKGCEDARTIHSLIYRSRGVEAETPSFVLNEESPVAKVGLVVIDECSMVDEELGR
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECHHHHHHHHHH
DLLSFGKPVLVLGDPAQLPPVKGGGFFTEGEPDIMLTDVHRQAADNPIIHMSMLIREGGT
HHHHCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEEECHHHHCCCCEEEEEEHHHCCCC
LPYGRYGESMVIGRDAIDAGQVTRADQVLVGLNRTRRAYNKRLRELFGHAEPMPEVGDKL
CCCCCCCCEEEEECCCCCCCCCCCHHHHEECHHHHHHHHHHHHHHHHCCCCCCCHHCCEE
VCLRNDKTKGLLNGGIWMVKANAGLRKKKLQIDAVPEEDQTRRPLRLSVLPDFFEGTEEN
EEEECCCCCCEECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEECCHHHCCCCCC
LTYQQRRTSDEFDYGYALTVHKAQGSQWNRLVLFDESFAFREHRSRWLYTGITRAAEHLV
CCHHHHCCCCCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHCCCEEHHHHHHHHHEEE
MVV
EEC
>Mature Secondary Structure
MDWSPQQDAALRAVAAWLKRGEPQVFRLFGYAGTGKTTLARRIAEDLDETVAFAAYTGKA
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEEECCCE
ALVLRSKGCEDARTIHSLIYRSRGVEAETPSFVLNEESPVAKVGLVVIDECSMVDEELGR
EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECHHHHHHHHHH
DLLSFGKPVLVLGDPAQLPPVKGGGFFTEGEPDIMLTDVHRQAADNPIIHMSMLIREGGT
HHHHCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEEECHHHHCCCCEEEEEEHHHCCCC
LPYGRYGESMVIGRDAIDAGQVTRADQVLVGLNRTRRAYNKRLRELFGHAEPMPEVGDKL
CCCCCCCCEEEEECCCCCCCCCCCHHHHEECHHHHHHHHHHHHHHHHCCCCCCCHHCCEE
VCLRNDKTKGLLNGGIWMVKANAGLRKKKLQIDAVPEEDQTRRPLRLSVLPDFFEGTEEN
EEEECCCCCCEECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEECCHHHCCCCCC
LTYQQRRTSDEFDYGYALTVHKAQGSQWNRLVLFDESFAFREHRSRWLYTGITRAAEHLV
CCHHHHCCCCCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHCCCEEHHHHHHHHHEEE
MVV
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]