Click here to switch to the map view.

The map label for this gene is 182679926

Identifier: 182679926

GI number: 182679926

Start: 3440488

End: 3441147

Strand: Reverse

Name: 182679926

Synonym: Bind_3021

Alternate gene names: NA

Gene position: 3441147-3440488 (Counterclockwise)

Preceding gene: 182679932

Following gene: 182679925

Centisome position: 82.52

GC content: 56.97

Gene sequence:

>660_bases
ATGGATTGCGATCGGATCAAGCTTTTTTGCCGCCGGGTTGCCTGTATCATGATCATGTCGATGGCCGTCCTCTGGGCCCA
AGGGCCAGGACCGGTTTTGGCGGAAACCTCCTCCCCGACGACTGAAATTCCGGCGCCTGAGACGCCGGCCACACCGCCGC
CCGCCGCTGATACGGGAACGCCAGGAAATGCCACGACGCAGGTGACGACGATCGAAATCCCGGCACGGCCCGTTCTTCTC
CTCAGTGGGAGTTCGGATTGGGAAAAGGGGTTTGCGACGATCCGCGAAAAACTCGCCACGATCGAGACGGAACTCAAGAC
GGCGGGGCTGACGCAAGCGGGCCATCCGCTGGCGGTCTTCACCTCGACCGATGAAAACGGCTTCAAGTTCAGCGCCATGA
TTCCCATCACGGCCAAGCCGGAAGGGCTCGATCATCTCGGCAATGAGGTGAAGGTCGGCGATTCGCCGTCTGGCAAGGCG
ATCAAGTTCCAGCATCGCGATGCTTATGACACGATTGATTCGACCTATGATCTCATCACAGCCTATCTCGATGAAAAGGG
ACTCGAGGCGCAAAATCTCTTCATCGAGGAATATCTGACCGATACCAAGACGAGCGATGATACGAGCCTGGAAACCGATA
TTTATGTCTTCCTGAAATGA

Upstream 100 bases:

>100_bases
ACGGAGCTGTTCCGGTTTGCTCTCCGATGTTCTATAGCTGAGATGATGGTCGCGGTTGGCGTCGTTCAGGCGGGATCATC
GCCATGCCAGGGAGCAAAAG

Downstream 100 bases:

>100_bases
ACTTTTGGAAAGGCACCGGGGCGGCGTTTCGACCGCCCCGTGAGGCGCAAGCGCTGCCATCATGAAGCTCAGCCGAACTT
CGGTGAGCGCCCTTTGGTGG

Product: transcription activator effector binding

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDCDRIKLFCRRVACIMIMSMAVLWAQGPGPVLAETSSPTTEIPAPETPATPPPAADTGTPGNATTQVTTIEIPARPVLL
LSGSSDWEKGFATIREKLATIETELKTAGLTQAGHPLAVFTSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKA
IKFQHRDAYDTIDSTYDLITAYLDEKGLEAQNLFIEEYLTDTKTSDDTSLETDIYVFLK

Sequences:

>Translated_219_residues
MDCDRIKLFCRRVACIMIMSMAVLWAQGPGPVLAETSSPTTEIPAPETPATPPPAADTGTPGNATTQVTTIEIPARPVLL
LSGSSDWEKGFATIREKLATIETELKTAGLTQAGHPLAVFTSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKA
IKFQHRDAYDTIDSTYDLITAYLDEKGLEAQNLFIEEYLTDTKTSDDTSLETDIYVFLK
>Mature_219_residues
MDCDRIKLFCRRVACIMIMSMAVLWAQGPGPVLAETSSPTTEIPAPETPATPPPAADTGTPGNATTQVTTIEIPARPVLL
LSGSSDWEKGFATIREKLATIETELKTAGLTQAGHPLAVFTSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKA
IKFQHRDAYDTIDSTYDLITAYLDEKGLEAQNLFIEEYLTDTKTSDDTSLETDIYVFLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23687; Mature: 23687

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCDRIKLFCRRVACIMIMSMAVLWAQGPGPVLAETSSPTTEIPAPETPATPPPAADTGT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PGNATTQVTTIEIPARPVLLLSGSSDWEKGFATIREKLATIETELKTAGLTQAGHPLAVF
CCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
TSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKAIKFQHRDAYDTIDSTYDLIT
ECCCCCCEEEEEEEEECCCCCCHHHCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH
AYLDEKGLEAQNLFIEEYLTDTKTSDDTSLETDIYVFLK
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MDCDRIKLFCRRVACIMIMSMAVLWAQGPGPVLAETSSPTTEIPAPETPATPPPAADTGT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
PGNATTQVTTIEIPARPVLLLSGSSDWEKGFATIREKLATIETELKTAGLTQAGHPLAVF
CCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
TSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKAIKFQHRDAYDTIDSTYDLIT
ECCCCCCEEEEEEEEECCCCCCHHHCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH
AYLDEKGLEAQNLFIEEYLTDTKTSDDTSLETDIYVFLK
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA