BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is yxnA [H]

Identifier: 182679897

GI number: 182679897

Start: 3397876

End: 3398886

Strand: Reverse

Name: yxnA [H]

Synonym: Bind_2990

Alternate gene names: 182679897

Gene position: 3398886-3397876 (Counterclockwise)

Preceding gene: 182679898

Following gene: 182679896

Centisome position: 81.51

GC content: 48.27

Gene sequence:

>1011_bases
ATGGGGTTGATGATGAAAATACGGAAGAAGCCCTTATCTGAACAAGTCATCGTCATTACCGGAGCTTCAAGCGGCATTGG
CCTTGCCACCGCGCTTTCCGCTGCCAAGCAAGGAGCCAAAGTTGTGCTCGCTTCGCGCAACGACGCAATCCTGGCTAAGA
TCGCAGATGATATACGAAAAAATGGCGGACAAGCTTTGGAACTGGTCACGGACGTCACACGCCGGGAAGATTTGGAATAT
CTTGCAGCAGAAACACTGAAAGTGTTTGGCGCGTTTGATACCTGGGTCAATAATGCCGGCATCTCTATCTTCGGCCGTAT
CGAAGACGTTTCAGATGAAGATCACCACCGGCTTTTTGAAACCAATTTCTGGGGAACCGTCTATGGCTCGACAATAGCAA
TTCAGCATTTAAAACATCATGGTGGTCGACTGATTAATATGGGCTCAATGGCGTCTGATGTAGCTATACCGCTCCAAGGC
ATGTATTGTGCGTCAAAACATGCCATTAAAGGCTTTACAGACGCACTGCGAATGGAGCTGGAAGCGGAAAATGCGCCTGT
TTCTGTTACATTGATCAAGCCCGCTTCGATTAATACGCCTTTTCCTGATCACGCCAAAAACTATATGGATCGGCGGCCTA
AGCTGCCTCCGCCCATCTATGCCGTTGAAGATGTCGCTGACGCTATCCTGCACGCTGCAGTACATGGACCACGTGATATT
TACGTAGGAGGCAGCAGTAAATTGATAAGTTCACTCCATAAGCAAATTCCCGCTGCTACGGATTGGATGGGTACACATCT
TTTGACAAAAACGCAGGATATAGATGGCTATGGAGCCATTGATGAAAATGCCCTCTATAAGCCCGGCCATGACGGTGAAA
TTCACGGAAAAACACCCCACCACGTCATGCATAGTACTTACACAAAAGCGAGCCTTCATCCAGCCCTCACAAATGTGCTC
CTCGCTGGAGCAACAGCCATGCTTTTAGGACGGACAATACGTAGACATTAA

Upstream 100 bases:

>100_bases
CGGTATTTATGATCAGAACACCTACCGGTCATTTTTTACCTGACCTACAGAGATATTGCGTTGCCACTTGGGCAAGCCCT
GCTGCCTTAAACATAAAGCT

Downstream 100 bases:

>100_bases
TTAGGAAAGTAATCGAAACCTAGTAAGCTCAAAACTCCATCCTCTGTGGCGGTCAGAAACGGCCCGTGCGGTTCCGCCTG
ACTGCAGGTCAGTGACGTCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MGLMMKIRKKPLSEQVIVITGASSGIGLATALSAAKQGAKVVLASRNDAILAKIADDIRKNGGQALELVTDVTRREDLEY
LAAETLKVFGAFDTWVNNAGISIFGRIEDVSDEDHHRLFETNFWGTVYGSTIAIQHLKHHGGRLINMGSMASDVAIPLQG
MYCASKHAIKGFTDALRMELEAENAPVSVTLIKPASINTPFPDHAKNYMDRRPKLPPPIYAVEDVADAILHAAVHGPRDI
YVGGSSKLISSLHKQIPAATDWMGTHLLTKTQDIDGYGAIDENALYKPGHDGEIHGKTPHHVMHSTYTKASLHPALTNVL
LAGATAMLLGRTIRRH

Sequences:

>Translated_336_residues
MGLMMKIRKKPLSEQVIVITGASSGIGLATALSAAKQGAKVVLASRNDAILAKIADDIRKNGGQALELVTDVTRREDLEY
LAAETLKVFGAFDTWVNNAGISIFGRIEDVSDEDHHRLFETNFWGTVYGSTIAIQHLKHHGGRLINMGSMASDVAIPLQG
MYCASKHAIKGFTDALRMELEAENAPVSVTLIKPASINTPFPDHAKNYMDRRPKLPPPIYAVEDVADAILHAAVHGPRDI
YVGGSSKLISSLHKQIPAATDWMGTHLLTKTQDIDGYGAIDENALYKPGHDGEIHGKTPHHVMHSTYTKASLHPALTNVL
LAGATAMLLGRTIRRH
>Mature_335_residues
GLMMKIRKKPLSEQVIVITGASSGIGLATALSAAKQGAKVVLASRNDAILAKIADDIRKNGGQALELVTDVTRREDLEYL
AAETLKVFGAFDTWVNNAGISIFGRIEDVSDEDHHRLFETNFWGTVYGSTIAIQHLKHHGGRLINMGSMASDVAIPLQGM
YCASKHAIKGFTDALRMELEAENAPVSVTLIKPASINTPFPDHAKNYMDRRPKLPPPIYAVEDVADAILHAAVHGPRDIY
VGGSSKLISSLHKQIPAATDWMGTHLLTKTQDIDGYGAIDENALYKPGHDGEIHGKTPHHVMHSTYTKASLHPALTNVLL
AGATAMLLGRTIRRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=35.0710900473934, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI4503817, Length=245, Percent_Identity=30.2040816326531, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI142976729, Length=261, Percent_Identity=28.735632183908, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=31.6582914572864, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI31542939, Length=229, Percent_Identity=27.5109170305677, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI210032110, Length=273, Percent_Identity=24.9084249084249, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI32483357, Length=206, Percent_Identity=29.6116504854369, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=26.530612244898, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI32455239, Length=203, Percent_Identity=29.5566502463054, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI5031765, Length=203, Percent_Identity=29.5566502463054, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI44680136, Length=109, Percent_Identity=35.7798165137615, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI44680133, Length=109, Percent_Identity=35.7798165137615, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI17738292, Length=109, Percent_Identity=35.7798165137615, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI19923817, Length=192, Percent_Identity=26.5625, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI40807363, Length=277, Percent_Identity=25.2707581227437, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI157739938, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=173, Percent_Identity=30.635838150289, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40548397, Length=208, Percent_Identity=28.3653846153846, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI214010158, Length=208, Percent_Identity=28.3653846153846, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI214010156, Length=208, Percent_Identity=28.3653846153846, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI22758144, Length=208, Percent_Identity=28.3653846153846, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=165, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI25282469, Length=276, Percent_Identity=27.8985507246377, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI7657478, Length=246, Percent_Identity=27.2357723577236, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=207, Percent_Identity=27.536231884058, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22507405, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI19743808, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7705925, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI150247226, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4504505, Length=180, Percent_Identity=29.4444444444444, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI38348362, Length=178, Percent_Identity=27.5280898876405, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786701, Length=233, Percent_Identity=30.4721030042918, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=31.9148936170213, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787905, Length=146, Percent_Identity=32.1917808219178, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI2367175, Length=201, Percent_Identity=29.8507462686567, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082160, Length=180, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=192, Percent_Identity=28.6458333333333, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=198, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17564282, Length=227, Percent_Identity=31.7180616740088, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17570069, Length=203, Percent_Identity=32.0197044334975, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32563809, Length=211, Percent_Identity=27.0142180094787, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=211, Percent_Identity=27.0142180094787, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI193203115, Length=242, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=223, Percent_Identity=28.2511210762332, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=168, Percent_Identity=31.547619047619, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=226, Percent_Identity=28.7610619469027, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=203, Percent_Identity=30.0492610837438, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=26.865671641791, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=230, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=226, Percent_Identity=30.5309734513274, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=246, Percent_Identity=26.0162601626016, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=226, Percent_Identity=29.646017699115, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=33.1683168316832, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=224, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=26.8939393939394, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=31.9587628865979, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=280, Percent_Identity=27.5, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=27.2058823529412, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=26.2172284644195, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=28.921568627451, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=238, Percent_Identity=33.1932773109244, Blast_Score=97, Evalue=4e-21,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=34.6534653465347, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=35.0253807106599, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356301, Length=245, Percent_Identity=31.0204081632653, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI23397609, Length=224, Percent_Identity=32.5892857142857, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21357041, Length=210, Percent_Identity=30.952380952381, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24640492, Length=218, Percent_Identity=29.8165137614679, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21358495, Length=201, Percent_Identity=27.363184079602, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=30.5, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281364892, Length=207, Percent_Identity=29.951690821256, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI28571387, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355631, Length=283, Percent_Identity=24.7349823321555, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281364494, Length=229, Percent_Identity=27.9475982532751, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=233, Percent_Identity=27.4678111587983, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24649181, Length=264, Percent_Identity=25.7575757575758, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24648944, Length=224, Percent_Identity=28.125, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221510726, Length=254, Percent_Identity=28.3464566929134, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641388, Length=242, Percent_Identity=28.099173553719, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581726, Length=261, Percent_Identity=25.6704980842912, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641232, Length=234, Percent_Identity=26.0683760683761, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24663911, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355319, Length=194, Percent_Identity=28.3505154639175, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI18859837, Length=221, Percent_Identity=29.8642533936652, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36412; Mature: 36281

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLMMKIRKKPLSEQVIVITGASSGIGLATALSAAKQGAKVVLASRNDAILAKIADDIRK
CCCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
NGGQALELVTDVTRREDLEYLAAETLKVFGAFDTWVNNAGISIFGRIEDVSDEDHHRLFE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHEEEE
TNFWGTVYGSTIAIQHLKHHGGRLINMGSMASDVAIPLQGMYCASKHAIKGFTDALRMEL
CCCCEEECCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHEEE
EAENAPVSVTLIKPASINTPFPDHAKNYMDRRPKLPPPIYAVEDVADAILHAAVHGPRDI
ECCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
YVGGSSKLISSLHKQIPAATDWMGTHLLTKTQDIDGYGAIDENALYKPGHDGEIHGKTPH
EECCCHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
HVMHSTYTKASLHPALTNVLLAGATAMLLGRTIRRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLMMKIRKKPLSEQVIVITGASSGIGLATALSAAKQGAKVVLASRNDAILAKIADDIRK
CCCHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
NGGQALELVTDVTRREDLEYLAAETLKVFGAFDTWVNNAGISIFGRIEDVSDEDHHRLFE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHEEEE
TNFWGTVYGSTIAIQHLKHHGGRLINMGSMASDVAIPLQGMYCASKHAIKGFTDALRMEL
CCCCEEECCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEECCHHHHHHHHHHHHEEE
EAENAPVSVTLIKPASINTPFPDHAKNYMDRRPKLPPPIYAVEDVADAILHAAVHGPRDI
ECCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
YVGGSSKLISSLHKQIPAATDWMGTHLLTKTQDIDGYGAIDENALYKPGHDGEIHGKTPH
EECCCHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
HVMHSTYTKASLHPALTNVLLAGATAMLLGRTIRRH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]