| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is yjeB [C]
Identifier: 182679703
GI number: 182679703
Start: 3177992
End: 3178480
Strand: Reverse
Name: yjeB [C]
Synonym: Bind_2791
Alternate gene names: 182679703
Gene position: 3178480-3177992 (Counterclockwise)
Preceding gene: 182679706
Following gene: 182679698
Centisome position: 76.22
GC content: 59.71
Gene sequence:
>489_bases ATGATCTTGAAGAGCCAAGTCGAATGGGCACTACATTGCTGCGCAATTCTCGCCGGCCTGCCCGAGGGGCGCTACCTGTC GACCAAGGCGCTGGCAGAACTCCACGGTCTGCCAAAGGAATATCTCTCCAAGGCACTGCAAAGCCTGTCACAGGCGGGGC TCGTTCATACGATGCTAGGCCCGTCCGGCGGATATCGCCTTGCAAGACCGCCCACGGAACTGACCTTCCTTGATATTGTG GAAGCTGTGGAAGGCAGGACACAGACCTTCGTGTGCAACAACATCCGCGTTAACAACCCCTGCCGCCCGAGGGACCATTG CGACAGCAGCCCTTGTGCGGTGGCGCGGATCATGTGGGAAGCGGATGAAGCCTGGCGTCAGAAACTGCGCGGCGTCACGT TGTCGGATCTCGGGCGGATCCTGTCGCAGGAGGTCTCTCCTACACTATGGAAGGACACCTTCGAATGGGTGCTTGACCGG GCGGGATGA
Upstream 100 bases:
>100_bases ATGCCTTTCAATTTAAGGCGATTTCCTCCGTTTACACCCCGCGTGTTTAGGGATATTCATTGTCCTTAATGCCATGGCGC TCCGATCGTGGACCGAATTG
Downstream 100 bases:
>100_bases ACACAAGACTTGCAGGAGGCATAGCCAACGAAAGATTGCTTGTCTCGCATTGTTTATAAACGAGATCGATAATTTCGTTT CGGGCTGGTATATGGCTAAC
Product: BadM/Rrf2 family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator BadM/Rrf2 Family; Transcriptional Regulator; Rrf2 Family Protein; Rrf2 Family Protein Transcriptional Regulator; Rrf2 Family Transcriptional Regulator Protein; Transcriptional Regulator Protein; RF2 Family Protein; HTH-Type Transcriptional Regulator; Rrf2 Family Transcriptional Regulator; Transcriptional Regulator Rrf2 Family; Rrf2 Transcriptional Regulator; Transcription Factor IscR; RRF2 Family Protein
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLGPSGGYRLARPPTELTFLDIV EAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWEADEAWRQKLRGVTLSDLGRILSQEVSPTLWKDTFEWVLDR AG
Sequences:
>Translated_162_residues MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLGPSGGYRLARPPTELTFLDIV EAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWEADEAWRQKLRGVTLSDLGRILSQEVSPTLWKDTFEWVLDR AG >Mature_162_residues MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLGPSGGYRLARPPTELTFLDIV EAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWEADEAWRQKLRGVTLSDLGRILSQEVSPTLWKDTFEWVLDR AG
Specific function: Unknown
COG id: COG1959
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18060; Mature: 18060
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS01332 UPF0074
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLG CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCC PSGGYRLARPPTELTFLDIVEAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWE CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHH ADEAWRQKLRGVTLSDLGRILSQEVSPTLWKDTFEWVLDRAG HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLG CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCC PSGGYRLARPPTELTFLDIVEAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWE CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHH ADEAWRQKLRGVTLSDLGRILSQEVSPTLWKDTFEWVLDRAG HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA