| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is xynZ [H]
Identifier: 182679567
GI number: 182679567
Start: 3007211
End: 3009523
Strand: Reverse
Name: xynZ [H]
Synonym: Bind_2643
Alternate gene names: 182679567
Gene position: 3009523-3007211 (Counterclockwise)
Preceding gene: 182679568
Following gene: 182679566
Centisome position: 72.17
GC content: 47.0
Gene sequence:
>2313_bases ATGCGCCTTTTATTATTTACAAGTGAATTTTATCCTTTACGCGGTGGAATCGGGACATATGCAGCCGAACTCGCCCGCGG TGCTACGGAGCTTGGTGGTGACGTAACGTTATACGCACCGTCCTATCACCAAGACTTAGCTGATGATGACTTAAAATGCT TTCCTTTCCGTGTTATCCGCTATGCCGGGCATCGGCATACGATGAAGAATCTTCCGCAAAAATTGCAGATTGTGCGCCGT GCAGTTCGATCCGAGACATTTGATATTATTCATGCCATGGATTGGCCCTTCTTCCTGCCAGTCCACCTCATGGCTCCATC AAAAGTGCACAAACTGTTCACAGTACATGGTAGTGATGTCAATGAAATGCGGGCGCCGGTTAAAGCAACTATCATATCGT TAGTTCGACTATTCTCGGGTAAATCGGAAATTTTAGCAAATAGTAACTTTACTCGTTCTCTCTTCAACCAACATTTCCCC GACATACCACCCCATAAAGTAAAAACGGAGTGGCTTGGAGTATCGGATTTCTGGTTTCAACCAGCTGCTAATCGTAGCGA AACGAGATTCAAACTCGGTGTTGCAGATGATGCTTATGTCATTCTCACGGTAGGACGCCTCACGCCCAGAAAAGGCCATC TCTCTGTAATTGAAGCTCTATCACGTCTTCCAGAGCGTATTAAGGAACACACGATTTATATAATCGTCGGACCTCACTAT GATGGTGAGTACACCAGTAAGGTGAAGGTTGCTGCTGCGGCGTCTGGATGCAAAACATTGTTTTTAAATGAACTATCAGA CGACGTCTTGCGTGATCTTTACAAGGCGTGCGATGTGTTTTGCCTCACTGGACACACAAAGCTAAACGGTCTTGTCGAAG GTTTCGGACTTGTCTATTTGGAAGCTGGCGCACAAGGGTTACCGTCGATCGCTGGTAACGTTGGCGGTATGCCGGAAGCT GTTGAGCACGGAAAATCTGGATTGGTCGTCAATAGCAACGATGCAGACTCTATCGCGCAATCATTGTGTGAACTCCATGA TCTTCCGAGATTCCGCCAAGCATTGGCAGATGGAGCGCTTGAACGAGCGAAGATTTTGACTTGGCGCCGTTGTGTTGCAG CTTCGTATGGTTTTTCATCCCATCATGCAAAGTGGCTCCAACCACATTCTAGTCCAATTTCTCTTACATCAGATATCACC CAACCGCAGAATGGGCTTGCGCGCCGTAGTGTGCTTGGAGCCTTCGCGTCAGTTGGACTTCTTAAAACGAAAATATTAGC GGCAACGCCCACAACGATCCTTCCTTTGAAGCAGGCTGCCGCACGCGTAGGTCTTTTATTCGGATGTGCTTTCGATAAGA TAGCGATTTCTGATGCAGCCTATGGAGCGCTCATCAAGACTCACGCTGCAATCCTTACAACCGATTACCATATGAAATTT AAGGCACTTCGTCGTAATGGACCAGAAGCGGATTTCACGATCGCAGATAGTTTAATTACGTTTGCGGATGCGGCAAGTAT CCCTATTCGTGGCCATAATCTGATTTGGAACGAGGGAAATCCAGATTGGTTAATCAAACTTCCTGCAAATGAACGCATTG AGTGGTTAGAACGCCATATCAAGGAGGTGATGGGGCGTTATCGTGGCCGCATACATTCTTGGGATGTAGTCAATGAGCCT TTTTGGCCTGGCCATAAAAAGCCAGGCGGCTTTCGGGATGGCCCTTGGTATTCCGCACTTGGACCAGAATATATCATCAA GGCTTTTCAAATAGCTCGACGCACCGATCCGTCAGCTAAGCTCGTCTTAAATGAAGCTTGGGTGGAACGGTCTGATGATC TCGGCTTAGTTGTTCGCGAGGAGTTGTTTAAGCTTCTCCAGGATCTTTCGGTGCGAGGTCTTATTGATGCAGTTGGTCTT GAGTGTCATATCCGCCCCCATTATACGCGAAATTTCGATATCCTTGCACAATTCATCGCAAAGGTGAGTACGCTTGGAAT TGATGTCTATATCACCGAACTCGATGTTGATGATTCTATTTTCTCTGGCTCGATGTCTGAGATCGACGATAAGGTCGCCG AAATCTATGGGGATTTCGTCCGTGCTATCACAAAAGCTCCAGCCGTGAAAATCTTAGAGACTTGGCAATTGGCTGATCGC TATAGCTTTTATCAAGATCAGCGTAAGGGAACAGCGCGTCCTTTACCATTTGACACTTCACTTGCACCTAAGCCAGCATA CCATACAATTATTAGCGCTCTTATAGACGCCGGCTCTCAACCTGTTGGAGTAGTCAGGACACCCCAACACTAG
Upstream 100 bases:
>100_bases TTATTTCGCAATCTAACCTAGCTACGCCAAGGCAAAGTTATCGTGCTGCAGGTATGCTCCGATTGATGATTGAGGCTCTA ACAAACTTCGGGTTTTCCAC
Downstream 100 bases:
>100_bases ATTCCGTTGACAAAGAGGATTCCCAAGAGATTACAAAAAGATTCAAAGCTGCTTTTTTAGGGCAGGGGGGCAAATCTTAG TTCTGAGGTGATGTCGGATG
Product: endo-1,4-beta-xylanase
Products: NA
Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]
Number of amino acids: Translated: 770; Mature: 770
Protein sequence:
>770_residues MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH
Sequences:
>Translated_770_residues MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH >Mature_770_residues MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIRYAGHRHTMKNLPQKLQIVRR AVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDVNEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFP DIPPHKVKTEWLGVSDFWFQPAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYLEAGAQGLPSIAGNVGGMPEA VEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGALERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDIT QPQNGLARRSVLGAFASVGLLKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHIKEVMGRYRGRIHSWDVVNEP FWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAKLVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGL ECHIRPHYTRNFDILAQFIAKVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG3693
COG function: function code G; Beta-1,4-xylanase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005084 - InterPro: IPR016134 - InterPro: IPR002105 - InterPro: IPR006584 - InterPro: IPR018242 - InterPro: IPR018247 - InterPro: IPR000801 - InterPro: IPR008979 - InterPro: IPR001000 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]
EC number: =3.2.1.8 [H]
Molecular weight: Translated: 85574; Mature: 85574
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: PS00591 GLYCOSYL_HYDROL_F10
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIR CEEEEEECCCCCCCCCHHHHHHHHHHCHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHH YAGHRHTMKNLPQKLQIVRRAVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHEEEEEECCCCH NEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFPDIPPHKVKTEWLGVSDFWFQ HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCC PAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCC DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYL CCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCEEEE EAGAQGLPSIAGNVGGMPEAVEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGAL ECCCCCCCHHHCCCCCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH ERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDITQPQNGLARRSVLGAFASVGL HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH LKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECHHHHH KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHI HHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHH KEVMGRYRGRIHSWDVVNEPFWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE LVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGLECHIRPHYTRNFDILAQFIA EEEEHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHH KVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR HHHHCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC >Mature Secondary Structure MRLLLFTSEFYPLRGGIGTYAAELARGATELGGDVTLYAPSYHQDLADDDLKCFPFRVIR CEEEEEECCCCCCCCCHHHHHHHHHHCHHHCCCCEEEECCCHHCCCCCCCCHHHHHHHHH YAGHRHTMKNLPQKLQIVRRAVRSETFDIIHAMDWPFFLPVHLMAPSKVHKLFTVHGSDV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHEEEEEECCCCH NEMRAPVKATIISLVRLFSGKSEILANSNFTRSLFNQHFPDIPPHKVKTEWLGVSDFWFQ HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCC PAANRSETRFKLGVADDAYVILTVGRLTPRKGHLSVIEALSRLPERIKEHTIYIIVGPHY CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCC DGEYTSKVKVAAAASGCKTLFLNELSDDVLRDLYKACDVFCLTGHTKLNGLVEGFGLVYL CCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCEEEE EAGAQGLPSIAGNVGGMPEAVEHGKSGLVVNSNDADSIAQSLCELHDLPRFRQALADGAL ECCCCCCCHHHCCCCCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHH ERAKILTWRRCVAASYGFSSHHAKWLQPHSSPISLTSDITQPQNGLARRSVLGAFASVGL HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHH LKTKILAATPTTILPLKQAAARVGLLFGCAFDKIAISDAAYGALIKTHAAILTTDYHMKF HHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECHHHHH KALRRNGPEADFTIADSLITFADAASIPIRGHNLIWNEGNPDWLIKLPANERIEWLERHI HHHHCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHH KEVMGRYRGRIHSWDVVNEPFWPGHKKPGGFRDGPWYSALGPEYIIKAFQIARRTDPSAK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE LVLNEAWVERSDDLGLVVREELFKLLQDLSVRGLIDAVGLECHIRPHYTRNFDILAQFIA EEEEHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHH KVSTLGIDVYITELDVDDSIFSGSMSEIDDKVAEIYGDFVRAITKAPAVKILETWQLADR HHHHCCEEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH YSFYQDQRKGTARPLPFDTSLAPKPAYHTIISALIDAGSQPVGVVRTPQH HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3139632; 7664125 [H]