| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is rsh [H]
Identifier: 182679397
GI number: 182679397
Start: 2786298
End: 2788511
Strand: Reverse
Name: rsh [H]
Synonym: Bind_2445
Alternate gene names: 182679397
Gene position: 2788511-2786298 (Counterclockwise)
Preceding gene: 182679398
Following gene: 182679396
Centisome position: 66.87
GC content: 59.53
Gene sequence:
>2214_bases ATGATGCGGCAATACGAGCTTGTCGATCGTGTGCGCAGCTATAATCCGCATGCGGACGAGGCGGCGCTCAATCGGGCTTA TGTCTATGCCATGCAAGCACATGGCTTGCAGAAACGTGCTTCGGGCGATCCCTATTTTTCGCATCCGCTTGAGGTCGCCG CGATCCTGACCGACATGAAGCTCGATGATGCGACCATCATCGCTGCGGTCTTGCATGATACGATCGAGGATACGGATTCG ACGCGCGAGGAAATCGATCGTCTGTTCGGTCCGGCGATCGGCAAGCTAGTCGATGGTCTGACCAAGCTCAAGAAACTCGA TCTCGTCTCCAAACGAGCCGCGCAGGCGGAAAATTTCCGCAAGCTCCTTTTGGCGATAGCGGAAGACGTTCGCGTGCTTC TCGTCAAGCTCGCCGACCGTCTGCATAATATGCGCACGCTTCATTTCGTGCCGCTCGAAAAACGCGCCCGCGTCGCGCAG GAAACGCTGGATATCTATGCGCCGCTCGCCGGCCGCATGGGCATGCAGCATATGCGCGACGAATTGGAAAATCTCGCCTT CAAGCATCTGATGCCCGAGGCCTATGCGATGATCGCGGCGCGGCTCGAGGATCTGCGCCAGAAGAACGGTCGGATCATCG CCACGATCGAGGAAGAATTGACGCGTGAACTGACCGCGCGTGGCATTGCCGCCAAGGTGGAAGGACGACAGAAACAGCCC TATTCGGTGTGGCGCAAGATGGAGCGCAAATCCATCTCCTTCGAGCAATTATCGGATATTTTCGGCTTTCGCGTCATCGT CCCGAACATTGAGGATTGCTACCGCGTCATCGGCGTCGTCCATACCAAATGGGCGGTCGTTCCAGGGCGTTTCAAGGATT ATATTTCCACGCCGAAGCCGAATGATTACCAGTCGATCCATACAACTGTGGTCGGACCTGGACGACAACGGGCGGAATTG CAGGTTCGCACGGAATTGATGCATGAGATCGCCCGCAATGGCATTGCCGCTCATGCTTTGTACAAGGAAGGGCTGCGTGC CGACCGCGGCGGTCTGTCCAGTGAGAGCCGCGCCTATCAATGGTTGCGCCGCACCATCGCGCTTCTGGCCGAAGGCGATA CGCCCGAGGAATTTCTCGAACATACCAAGCTCGAATTGTTCCATGATCAGGTGTTCTGTTTCACGCCGGCGGGCCGGTTG ATCGCTCTGCCGCGTGGTGCGACACCCATCGATTTCGCTTATGCCGTGCATACCGATCTCGGTAATACGGCGGTGGGCGC CAAGATCAACGGTCGCCACGCGCCCTTGCTTTCGGAATTGCAAAACGGCGATGAAGTTGAGATCGCTTGCGCCGAGGGGC AGGTGCCGCCCGCCGTATGGGAAAGCCTGGTGATGACCGGCAAGGCGCGCTCGGCCATCCGGCGCGCCACGCGCGGCGCG GTGCGTGCGCAATATGCGGGGCTCGGTCGGCAGATCGTGGCGCGGGCCTTCGAACGCGCAGGCAAGCCGTTCAGTGAGGA GAAACTGAAAAGCGCCTTGCCGCGTCTGGCGCGGGCGAGCGTGGATGACGTGCTAGCCGCCGTCGGACGCGGAGAAATGT TTTCAGGCGATGTTGTGAAGGCGGTCCATCCGGAATTCGTGGATGAGCGCAAGCCGGCGGCGACGTCCACGCGTCAGCGC GGCGAGCCCGGCTGGTTCGGGATCAAGAAAGCATCGGGGCTCGTCTTCAAGGTGCCAGGGCCGGAAGGGGAAAGTGATCG CAAATCAATCCCGATCCGTGGCCTGCAAGGCGATCTGCCGGTGCGTTTCGCCCCGCATGGCGGTGCCGTGCCGGGCGATC GGATCGTCGGTATCTTGACGCCGGGGGAGGGGATCACGATCTACCCGATCCAGGCGCCGGACCTGACTGCCTTCGACGAA CAGCCTGAACGCTGGCTCGATGTGCGTTGGGATATCGAGGAAGGCCGGCAGGAATTCTTTCCGGCCGAGATCAAGGTGAC AGCCATCAACGAGCCGGGCACGCTGGGGACCATAGCGACCGTGATCGGTGAAGCGGGCGCCAATATCGACAATGTCGTCA TGAAGGCGATTTCAACGGATTTCCGGGAAATCATCATTGATGTTGAAGTCAACGACTTGAAGCATCTTAACGCCATCATG CAACAATTGCGTGCGCGGCCCGTGGTGCATCAGGTGGAAAGGGTGAACGGCTGA
Upstream 100 bases:
>100_bases ATCCTTGCGGTTGGCGTATTATTCCTAACGCTTCGGGCCGGGAGCCTGATGCGAGGATGCCAGCCAAGAGGACAGTGCGA AAAGGCGGTCTTGTCCGAAC
Downstream 100 bases:
>100_bases TGTCTGCTGGGAAAGCGTTGCGTCTTGGAGTGAATATTGATCATGTCGCGACCTTGCGCAATGCGCGGGGTGGAGCGCGG CCTGACCCCGTGCGCGCCGC
Product: (p)ppGpp synthetase I SpoT/RelA
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MMRQYELVDRVRSYNPHADEAALNRAYVYAMQAHGLQKRASGDPYFSHPLEVAAILTDMKLDDATIIAAVLHDTIEDTDS TREEIDRLFGPAIGKLVDGLTKLKKLDLVSKRAAQAENFRKLLLAIAEDVRVLLVKLADRLHNMRTLHFVPLEKRARVAQ ETLDIYAPLAGRMGMQHMRDELENLAFKHLMPEAYAMIAARLEDLRQKNGRIIATIEEELTRELTARGIAAKVEGRQKQP YSVWRKMERKSISFEQLSDIFGFRVIVPNIEDCYRVIGVVHTKWAVVPGRFKDYISTPKPNDYQSIHTTVVGPGRQRAEL QVRTELMHEIARNGIAAHALYKEGLRADRGGLSSESRAYQWLRRTIALLAEGDTPEEFLEHTKLELFHDQVFCFTPAGRL IALPRGATPIDFAYAVHTDLGNTAVGAKINGRHAPLLSELQNGDEVEIACAEGQVPPAVWESLVMTGKARSAIRRATRGA VRAQYAGLGRQIVARAFERAGKPFSEEKLKSALPRLARASVDDVLAAVGRGEMFSGDVVKAVHPEFVDERKPAATSTRQR GEPGWFGIKKASGLVFKVPGPEGESDRKSIPIRGLQGDLPVRFAPHGGAVPGDRIVGILTPGEGITIYPIQAPDLTAFDE QPERWLDVRWDIEEGRQEFFPAEIKVTAINEPGTLGTIATVIGEAGANIDNVVMKAISTDFREIIIDVEVNDLKHLNAIM QQLRARPVVHQVERVNG
Sequences:
>Translated_737_residues MMRQYELVDRVRSYNPHADEAALNRAYVYAMQAHGLQKRASGDPYFSHPLEVAAILTDMKLDDATIIAAVLHDTIEDTDS TREEIDRLFGPAIGKLVDGLTKLKKLDLVSKRAAQAENFRKLLLAIAEDVRVLLVKLADRLHNMRTLHFVPLEKRARVAQ ETLDIYAPLAGRMGMQHMRDELENLAFKHLMPEAYAMIAARLEDLRQKNGRIIATIEEELTRELTARGIAAKVEGRQKQP YSVWRKMERKSISFEQLSDIFGFRVIVPNIEDCYRVIGVVHTKWAVVPGRFKDYISTPKPNDYQSIHTTVVGPGRQRAEL QVRTELMHEIARNGIAAHALYKEGLRADRGGLSSESRAYQWLRRTIALLAEGDTPEEFLEHTKLELFHDQVFCFTPAGRL IALPRGATPIDFAYAVHTDLGNTAVGAKINGRHAPLLSELQNGDEVEIACAEGQVPPAVWESLVMTGKARSAIRRATRGA VRAQYAGLGRQIVARAFERAGKPFSEEKLKSALPRLARASVDDVLAAVGRGEMFSGDVVKAVHPEFVDERKPAATSTRQR GEPGWFGIKKASGLVFKVPGPEGESDRKSIPIRGLQGDLPVRFAPHGGAVPGDRIVGILTPGEGITIYPIQAPDLTAFDE QPERWLDVRWDIEEGRQEFFPAEIKVTAINEPGTLGTIATVIGEAGANIDNVVMKAISTDFREIIIDVEVNDLKHLNAIM QQLRARPVVHQVERVNG >Mature_737_residues MMRQYELVDRVRSYNPHADEAALNRAYVYAMQAHGLQKRASGDPYFSHPLEVAAILTDMKLDDATIIAAVLHDTIEDTDS TREEIDRLFGPAIGKLVDGLTKLKKLDLVSKRAAQAENFRKLLLAIAEDVRVLLVKLADRLHNMRTLHFVPLEKRARVAQ ETLDIYAPLAGRMGMQHMRDELENLAFKHLMPEAYAMIAARLEDLRQKNGRIIATIEEELTRELTARGIAAKVEGRQKQP YSVWRKMERKSISFEQLSDIFGFRVIVPNIEDCYRVIGVVHTKWAVVPGRFKDYISTPKPNDYQSIHTTVVGPGRQRAEL QVRTELMHEIARNGIAAHALYKEGLRADRGGLSSESRAYQWLRRTIALLAEGDTPEEFLEHTKLELFHDQVFCFTPAGRL IALPRGATPIDFAYAVHTDLGNTAVGAKINGRHAPLLSELQNGDEVEIACAEGQVPPAVWESLVMTGKARSAIRRATRGA VRAQYAGLGRQIVARAFERAGKPFSEEKLKSALPRLARASVDDVLAAVGRGEMFSGDVVKAVHPEFVDERKPAATSTRQR GEPGWFGIKKASGLVFKVPGPEGESDRKSIPIRGLQGDLPVRFAPHGGAVPGDRIVGILTPGEGITIYPIQAPDLTAFDE QPERWLDVRWDIEEGRQEFFPAEIKVTAINEPGTLGTIATVIGEAGANIDNVVMKAISTDFREIIIDVEVNDLKHLNAIM QQLRARPVVHQVERVNG
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38348360, Length=135, Percent_Identity=37.037037037037, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1790082, Length=726, Percent_Identity=38.1542699724518, Blast_Score=501, Evalue=1e-143, Organism=Escherichia coli, GI1789147, Length=730, Percent_Identity=32.7397260273973, Blast_Score=369, Evalue=1e-103, Organism=Caenorhabditis elegans, GI25143118, Length=133, Percent_Identity=37.593984962406, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24650996, Length=124, Percent_Identity=36.2903225806452, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 81951; Mature: 81951
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRQYELVDRVRSYNPHADEAALNRAYVYAMQAHGLQKRASGDPYFSHPLEVAAILTDMK CCCHHHHHHHHHCCCCCCHHHHHHHHHEEEHHHCCCHHHCCCCCCCCCHHHHHHHHHHCC LDDATIIAAVLHDTIEDTDSTREEIDRLFGPAIGKLVDGLTKLKKLDLVSKRAAQAENFR CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAIAEDVRVLLVKLADRLHNMRTLHFVPLEKRARVAQETLDIYAPLAGRMGMQHMRD HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH ELENLAFKHLMPEAYAMIAARLEDLRQKNGRIIATIEEELTRELTARGIAAKVEGRQKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEECCCCCCCC YSVWRKMERKSISFEQLSDIFGFRVIVPNIEDCYRVIGVVHTKWAVVPGRFKDYISTPKP HHHHHHHHHHCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCHHHHHCCCCCC NDYQSIHTTVVGPGRQRAELQVRTELMHEIARNGIAAHALYKEGLRADRGGLSSESRAYQ CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHH WLRRTIALLAEGDTPEEFLEHTKLELFHDQVFCFTPAGRLIALPRGATPIDFAYAVHTDL HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEECCC GNTAVGAKINGRHAPLLSELQNGDEVEIACAEGQVPPAVWESLVMTGKARSAIRRATRGA CCCEECCEECCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHH VRAQYAGLGRQIVARAFERAGKPFSEEKLKSALPRLARASVDDVLAAVGRGEMFSGDVVK HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH AVHPEFVDERKPAATSTRQRGEPGWFGIKKASGLVFKVPGPEGESDRKSIPIRGLQGDLP HCCHHHHHCCCCCCCCHHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCC VRFAPHGGAVPGDRIVGILTPGEGITIYPIQAPDLTAFDEQPERWLDVRWDIEEGRQEFF EEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHEEEEECHHHHHHHCC PAEIKVTAINEPGTLGTIATVIGEAGANIDNVVMKAISTDFREIIIDVEVNDLKHLNAIM CCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHEEEEEEHHHHHHHHHHH QQLRARPVVHQVERVNG HHHHCCHHHHHHHHCCC >Mature Secondary Structure MMRQYELVDRVRSYNPHADEAALNRAYVYAMQAHGLQKRASGDPYFSHPLEVAAILTDMK CCCHHHHHHHHHCCCCCCHHHHHHHHHEEEHHHCCCHHHCCCCCCCCCHHHHHHHHHHCC LDDATIIAAVLHDTIEDTDSTREEIDRLFGPAIGKLVDGLTKLKKLDLVSKRAAQAENFR CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAIAEDVRVLLVKLADRLHNMRTLHFVPLEKRARVAQETLDIYAPLAGRMGMQHMRD HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH ELENLAFKHLMPEAYAMIAARLEDLRQKNGRIIATIEEELTRELTARGIAAKVEGRQKQP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEECCCCCCCC YSVWRKMERKSISFEQLSDIFGFRVIVPNIEDCYRVIGVVHTKWAVVPGRFKDYISTPKP HHHHHHHHHHCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHEEECCCHHHHHCCCCCC NDYQSIHTTVVGPGRQRAELQVRTELMHEIARNGIAAHALYKEGLRADRGGLSSESRAYQ CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHH WLRRTIALLAEGDTPEEFLEHTKLELFHDQVFCFTPAGRLIALPRGATPIDFAYAVHTDL HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEECCC GNTAVGAKINGRHAPLLSELQNGDEVEIACAEGQVPPAVWESLVMTGKARSAIRRATRGA CCCEECCEECCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHH VRAQYAGLGRQIVARAFERAGKPFSEEKLKSALPRLARASVDDVLAAVGRGEMFSGDVVK HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHH AVHPEFVDERKPAATSTRQRGEPGWFGIKKASGLVFKVPGPEGESDRKSIPIRGLQGDLP HCCHHHHHCCCCCCCCHHCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCC VRFAPHGGAVPGDRIVGILTPGEGITIYPIQAPDLTAFDEQPERWLDVRWDIEEGRQEFF EEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHHHEEEEECHHHHHHHCC PAEIKVTAINEPGTLGTIATVIGEAGANIDNVVMKAISTDFREIIIDVEVNDLKHLNAIM CCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHEEEEEEHHHHHHHHHHH QQLRARPVVHQVERVNG HHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA