| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is 182679166
Identifier: 182679166
GI number: 182679166
Start: 2524033
End: 2526420
Strand: Direct
Name: 182679166
Synonym: Bind_2204
Alternate gene names: NA
Gene position: 2524033-2526420 (Clockwise)
Preceding gene: 182679165
Following gene: 182679168
Centisome position: 60.53
GC content: 57.62
Gene sequence:
>2388_bases ATGGATGATCGCGCGCACGGTCCGGCCGGAATCAGTCAGCCTCTCTCGCCGGATCTGTTGCAGCGTCTCAATGCCTGGTG GCGCGCCGCCAATTATCTCTCGGTGGCGCAGCTCTACCTTCTCGACAATCCGCTGTTGCGGCAAAAGCTCACCCTGGATC ATATCAAGCCGCGCCTGCTCGGCCATTGGGGCACGACACCGGGGCTCAATTTCATCTATGTGCATCTCAACAGGATCATC AAGGAACGCGATCTCGATATTCTGTTCATTGCTGGCCCCGGGCATGGCGCGCCGGGGCTCATTGCCAATAGCTGGCTGGA AAAGACCTATAGCGAGGTCTATCCCGCTGTTTCGCAAGATATCGAAGGCATGACCCGGCTATGCCGCCAATTTTCATTCC CTGTCGGCATCCCGAGCCATGCGGCGCCGGAAACACCCGGCTCCATCCATGAAGGCGGCGAGCTTGGCTATTCGCTCTCC CATGCCTTTGGCGCGGTCTTTGACAACCCCGACCTGATCGCGGCCTGCGTGATCGGAGACGGCGAGGCGGAAACCGGCCC ACTCGCCACGTCATGGCATGCCAATAAATTTCTCGATGCCGCGCGTGATGGCGCCGTGCTGCCGATCCTTCATCTCAACG GCTATAAAATCGCCAATCCCACCGTGCTCGGGCGCATCCCGTCCGATGAATTGGAAAATCTGCTGCAAGGCTATGGCTAT GCGCCCCTTTTCGTCGAAGGCGACGACCCGGACATTATGCATCGGCACATGGCCGAAGCACTAAATGTCGCTTTTGCGGG TATTGCCAAAATCCAGCGAGCCGCACGTGTCGAGGGCCATATCGAGCGGCCACGCTGGCCCATGCTGGTGCTCCGCAGCC CCAAGGGCTGGACCGGCCCCAAAACGGTTGACGGGTTGAAGACGGAAGGATTTTGGCGTGCCCATCAGGTCCCATTCACC ATCGCCGACAAGCCTGAACATCTCTCGCTTCTCGAAAGCTGGCTGAAAAGCTACCGACCGGAGGAGCTTTTCGAGGAAAG CGGCGCCCTCAAGCCGGAGATTGCTTCCCTGGCCCCCAGCGGGGAGCGCCGAATGAGCGCCAATCCGCAGGCCAATGGCG GCAACTTGCCACGGCCGTTGCAAATACCGGATTTTACCCTGCATGCCGTCGATGTCGATTACCCCGGCGCACGAACGGCA GAGGCGACTTTCGTTATGGGGCAATTTCTGCGCGACATCATGCGCGCCAATGAGACAAACAAGAATTTCCGCGTCTTCGG GCCGGATGAAACCGCCTCCAACCGTTTGCAGGCGCTCTACGACGTCACGGACAAGACCTGGAATGCCGCCTTCATCGCGG AGGATGAACATCTCGACCCGACGGGCCGCGTCATGGAAATCCTCAGCGAACATACATGCCAAGGCTGGCTTGAAGGCTAT CTGCTCACGGGGCGCCATGGCCTCATGTCTTGTTATGAGGCCTTCATTCATATTGTTGATTCCATGGTCAATCAGCACGC CAAATGGCTCAAGACGGCGCGTGGTGTCCCATGGCGTCGGCCCATCGCCTCGCTCAATTATCTTCTAACGTCTCATGTCT GGCGCCAGGATCATAATGGCTTTAGCCATCAGGATCCCGGTTTCATCGATCATATCGCCAACAAGAAATCCGATATCGCG CGCGTTTATCTACCGCCGGATGCCAATTGCCTTCTCTATATCACCGATCATTGTCTGCGCAGCTGGAACAGGATCAATGT CATTGTCGCCGGCAAACAGCCGGAACCGCAATGGCTCGACATGGAGGAAGCGATCAGCCATTGCCGCGCCGGTCTCGGCA TCTGGAGTTTCGCTAGCAATGATCAAGATAGCGAGCCCGATGTGGTCCTCGCCTGCGCCGGCGACGTGCCAACGCTCGAA ACCCTCGCCGCAGCCGATTTCTTGCATACACATCTGCCGGAGGTGAAAGTCCGTGTCGTCAATATCGTTGATCTGTTTGC GCTAGAGCCGCAAACACGCCATCCGCATGGCTGGAGCGATAAGGATTTTGATACGCTGTTCACCAAGGACAAACCGGTGA TCTTCGCCTATCATGGTTATCCTTCCCTCATCCATCGGCTGATCTACAAGCGGACCAACCATTCCAATTTCCACGTCCAC GGCTATCAGGAAGAGGGTTCAACGACGACACCCTTCGATATGGTGGTGCGCAACCGGCTCGATCGTTTTCATCTCGTCGG CGACGTTGTCGATCATCTACCGAAGCTCGGCGCCAAGGCGGCCTATGTCAAACAATGGCTGCGTGACAAGTTCGCCGAGC ACGAACGCTATATCGTGGCGCATGGCGAGGATTTGCCGGAGATCCGTCATTGGCGCTGGCCAGAATGA
Upstream 100 bases:
>100_bases GCGCATATCGTTGAGACGCATGAGTCAGCCACGCCCAAGACCAATGCTTTTTTACGCAAAGCAGAATGCTTCACGTAAAC AGCGATAGCGGAGAGCAATA
Downstream 100 bases:
>100_bases CAGCTCGATCGCCAGCGGCCGTAAAGAATGACCGCTGGCATCGCTCATACCTTCGATTACCGCCGCCGCATAGCCTCAGC CAAGGCGGCACCAAGCGCGC
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MDDRAHGPAGISQPLSPDLLQRLNAWWRAANYLSVAQLYLLDNPLLRQKLTLDHIKPRLLGHWGTTPGLNFIYVHLNRII KERDLDILFIAGPGHGAPGLIANSWLEKTYSEVYPAVSQDIEGMTRLCRQFSFPVGIPSHAAPETPGSIHEGGELGYSLS HAFGAVFDNPDLIAACVIGDGEAETGPLATSWHANKFLDAARDGAVLPILHLNGYKIANPTVLGRIPSDELENLLQGYGY APLFVEGDDPDIMHRHMAEALNVAFAGIAKIQRAARVEGHIERPRWPMLVLRSPKGWTGPKTVDGLKTEGFWRAHQVPFT IADKPEHLSLLESWLKSYRPEELFEESGALKPEIASLAPSGERRMSANPQANGGNLPRPLQIPDFTLHAVDVDYPGARTA EATFVMGQFLRDIMRANETNKNFRVFGPDETASNRLQALYDVTDKTWNAAFIAEDEHLDPTGRVMEILSEHTCQGWLEGY LLTGRHGLMSCYEAFIHIVDSMVNQHAKWLKTARGVPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHIANKKSDIA RVYLPPDANCLLYITDHCLRSWNRINVIVAGKQPEPQWLDMEEAISHCRAGLGIWSFASNDQDSEPDVVLACAGDVPTLE TLAAADFLHTHLPEVKVRVVNIVDLFALEPQTRHPHGWSDKDFDTLFTKDKPVIFAYHGYPSLIHRLIYKRTNHSNFHVH GYQEEGSTTTPFDMVVRNRLDRFHLVGDVVDHLPKLGAKAAYVKQWLRDKFAEHERYIVAHGEDLPEIRHWRWPE
Sequences:
>Translated_795_residues MDDRAHGPAGISQPLSPDLLQRLNAWWRAANYLSVAQLYLLDNPLLRQKLTLDHIKPRLLGHWGTTPGLNFIYVHLNRII KERDLDILFIAGPGHGAPGLIANSWLEKTYSEVYPAVSQDIEGMTRLCRQFSFPVGIPSHAAPETPGSIHEGGELGYSLS HAFGAVFDNPDLIAACVIGDGEAETGPLATSWHANKFLDAARDGAVLPILHLNGYKIANPTVLGRIPSDELENLLQGYGY APLFVEGDDPDIMHRHMAEALNVAFAGIAKIQRAARVEGHIERPRWPMLVLRSPKGWTGPKTVDGLKTEGFWRAHQVPFT IADKPEHLSLLESWLKSYRPEELFEESGALKPEIASLAPSGERRMSANPQANGGNLPRPLQIPDFTLHAVDVDYPGARTA EATFVMGQFLRDIMRANETNKNFRVFGPDETASNRLQALYDVTDKTWNAAFIAEDEHLDPTGRVMEILSEHTCQGWLEGY LLTGRHGLMSCYEAFIHIVDSMVNQHAKWLKTARGVPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHIANKKSDIA RVYLPPDANCLLYITDHCLRSWNRINVIVAGKQPEPQWLDMEEAISHCRAGLGIWSFASNDQDSEPDVVLACAGDVPTLE TLAAADFLHTHLPEVKVRVVNIVDLFALEPQTRHPHGWSDKDFDTLFTKDKPVIFAYHGYPSLIHRLIYKRTNHSNFHVH GYQEEGSTTTPFDMVVRNRLDRFHLVGDVVDHLPKLGAKAAYVKQWLRDKFAEHERYIVAHGEDLPEIRHWRWPE >Mature_795_residues MDDRAHGPAGISQPLSPDLLQRLNAWWRAANYLSVAQLYLLDNPLLRQKLTLDHIKPRLLGHWGTTPGLNFIYVHLNRII KERDLDILFIAGPGHGAPGLIANSWLEKTYSEVYPAVSQDIEGMTRLCRQFSFPVGIPSHAAPETPGSIHEGGELGYSLS HAFGAVFDNPDLIAACVIGDGEAETGPLATSWHANKFLDAARDGAVLPILHLNGYKIANPTVLGRIPSDELENLLQGYGY APLFVEGDDPDIMHRHMAEALNVAFAGIAKIQRAARVEGHIERPRWPMLVLRSPKGWTGPKTVDGLKTEGFWRAHQVPFT IADKPEHLSLLESWLKSYRPEELFEESGALKPEIASLAPSGERRMSANPQANGGNLPRPLQIPDFTLHAVDVDYPGARTA EATFVMGQFLRDIMRANETNKNFRVFGPDETASNRLQALYDVTDKTWNAAFIAEDEHLDPTGRVMEILSEHTCQGWLEGY LLTGRHGLMSCYEAFIHIVDSMVNQHAKWLKTARGVPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHIANKKSDIA RVYLPPDANCLLYITDHCLRSWNRINVIVAGKQPEPQWLDMEEAISHCRAGLGIWSFASNDQDSEPDVVLACAGDVPTLE TLAAADFLHTHLPEVKVRVVNIVDLFALEPQTRHPHGWSDKDFDTLFTKDKPVIFAYHGYPSLIHRLIYKRTNHSNFHVH GYQEEGSTTTPFDMVVRNRLDRFHLVGDVVDHLPKLGAKAAYVKQWLRDKFAEHERYIVAHGEDLPEIRHWRWPE
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PHK_BEII9 (B2IGR2)
Other databases:
- EMBL: CP001016 - RefSeq: YP_001833312.1 - GeneID: 6199758 - GenomeReviews: CP001016_GR - KEGG: bid:Bind_2204 - HOGENOM: HBG285855 - OMA: AIAHCTR - ProtClustDB: PRK05261 - HAMAP: MF_01403 - InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 - PIRSF: PIRSF017245
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N; SSF52922 Transketo_C_like
EC number: NA
Molecular weight: Translated: 89474; Mature: 89474
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS60002 PHOSPHOKETOLASE_1; PS60003 PHOSPHOKETOLASE_2; PS00187 TPP_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDRAHGPAGISQPLSPDLLQRLNAWWRAANYLSVAQLYLLDNPLLRQKLTLDHIKPRLL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH GHWGTTPGLNFIYVHLNRIIKERDLDILFIAGPGHGAPGLIANSWLEKTYSEVYPAVSQD CCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH IEGMTRLCRQFSFPVGIPSHAAPETPGSIHEGGELGYSLSHAFGAVFDNPDLIAACVIGD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC GEAETGPLATSWHANKFLDAARDGAVLPILHLNGYKIANPTVLGRIPSDELENLLQGYGY CCCCCCCCEECCCHHHHHHHHCCCCEEEEEEECCEEECCCEEEECCCHHHHHHHHHHCCC APLFVEGDDPDIMHRHMAEALNVAFAGIAKIQRAARVEGHIERPRWPMLVLRSPKGWTGP CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC KTVDGLKTEGFWRAHQVPFTIADKPEHLSLLESWLKSYRPEELFEESGALKPEIASLAPS CCCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCC GERRMSANPQANGGNLPRPLQIPDFTLHAVDVDYPGARTAEATFVMGQFLRDIMRANETN CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC KNFRVFGPDETASNRLQALYDVTDKTWNAAFIAEDEHLDPTGRVMEILSEHTCQGWLEGY CCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCE LLTGRHGLMSCYEAFIHIVDSMVNQHAKWLKTARGVPWRRPIASLNYLLTSHVWRQDHNG EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC FSHQDPGFIDHIANKKSDIARVYLPPDANCLLYITDHCLRSWNRINVIVAGKQPEPQWLD CCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCEEEEEEECCCCCCCCCC MEEAISHCRAGLGIWSFASNDQDSEPDVVLACAGDVPTLETLAAADFLHTHLPEVKVRVV HHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE NIVDLFALEPQTRHPHGWSDKDFDTLFTKDKPVIFAYHGYPSLIHRLIYKRTNHSNFHVH EEEHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEE GYQEEGSTTTPFDMVVRNRLDRFHLVGDVVDHLPKLGAKAAYVKQWLRDKFAEHERYIVA EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEE HGEDLPEIRHWRWPE CCCCCCHHCCCCCCC >Mature Secondary Structure MDDRAHGPAGISQPLSPDLLQRLNAWWRAANYLSVAQLYLLDNPLLRQKLTLDHIKPRLL CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH GHWGTTPGLNFIYVHLNRIIKERDLDILFIAGPGHGAPGLIANSWLEKTYSEVYPAVSQD CCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH IEGMTRLCRQFSFPVGIPSHAAPETPGSIHEGGELGYSLSHAFGAVFDNPDLIAACVIGD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC GEAETGPLATSWHANKFLDAARDGAVLPILHLNGYKIANPTVLGRIPSDELENLLQGYGY CCCCCCCCEECCCHHHHHHHHCCCCEEEEEEECCEEECCCEEEECCCHHHHHHHHHHCCC APLFVEGDDPDIMHRHMAEALNVAFAGIAKIQRAARVEGHIERPRWPMLVLRSPKGWTGP CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC KTVDGLKTEGFWRAHQVPFTIADKPEHLSLLESWLKSYRPEELFEESGALKPEIASLAPS CCCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCC GERRMSANPQANGGNLPRPLQIPDFTLHAVDVDYPGARTAEATFVMGQFLRDIMRANETN CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC KNFRVFGPDETASNRLQALYDVTDKTWNAAFIAEDEHLDPTGRVMEILSEHTCQGWLEGY CCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCE LLTGRHGLMSCYEAFIHIVDSMVNQHAKWLKTARGVPWRRPIASLNYLLTSHVWRQDHNG EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC FSHQDPGFIDHIANKKSDIARVYLPPDANCLLYITDHCLRSWNRINVIVAGKQPEPQWLD CCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEEEHHHHCCCCEEEEEEECCCCCCCCCC MEEAISHCRAGLGIWSFASNDQDSEPDVVLACAGDVPTLETLAAADFLHTHLPEVKVRVV HHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE NIVDLFALEPQTRHPHGWSDKDFDTLFTKDKPVIFAYHGYPSLIHRLIYKRTNHSNFHVH EEEHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEE GYQEEGSTTTPFDMVVRNRLDRFHLVGDVVDHLPKLGAKAAYVKQWLRDKFAEHERYIVA EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEE HGEDLPEIRHWRWPE CCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA