| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
Click here to switch to the map view.
The map label for this gene is 182678980
Identifier: 182678980
GI number: 182678980
Start: 2301040
End: 2302440
Strand: Direct
Name: 182678980
Synonym: Bind_2015
Alternate gene names: NA
Gene position: 2301040-2302440 (Clockwise)
Preceding gene: 182678977
Following gene: 182678981
Centisome position: 55.18
GC content: 51.32
Gene sequence:
>1401_bases ATGCCCATCCCAAGGACACATTGGAGACGGGCCAAGCAGTCGATCGATCCCCATGAAACGGATAGCCTACAAGAAAATAA GCAACAAAAATATCGGAGCACGGTAACAAGAATGCGGGGACTTTTTCGCAATCAACGCGTCAATTCGATGATCTTAATTG CATCATTGCGCGTCGTCTCTTTGGTGACCAATCTTGGCACCGGCATGATCACCGCATGGTCACTTGGTCCAGCGGGGCGC GGCACACAAGCCGCCATATTGCTCGGAGCTCTGACCCTGAGTGGCATATGCAGTTTCGGTCTGCATACAGCGCTCGTTTA CAATATGAAATCCGATCCACCAAATAAAAGCTATTATTTTGGCAGCGCCTTATTGATCGGATTAATCGTCAGTCTCATCG GCGTCACCATCGGCTGGTTCGCCCTCCCCTGGATCTTGGACAAGTTTGATGAACATACTTTGCTCGCCGGGCGCCTCTTG ACCTTTGTCGTACCGGTCAGCGTGATCTCCTATGTGTTGAACGGTGTCCTCGATGGACATCACGAATTCAATTTCGTGAG CCGACTAGGCCTTTTAAACAATTTCTTCATCCTGTGTAGTCTTTCGCTTTTATGGCTCTCGGGATTGCTGACGCCGGCCA CAGCCGCAATGAGCTATCTCCTGCCAACAGTTCCGATCACTGCAATGCTCGCTTGGCGTGCCACGAGTATTTTGCGCCCG GCCACTCCCTTTCATGGCGCCTGTCTCAAGCGAATGTTCACCTATTCCGTGAGATTTTTCGGAGTCGATCTGATCTGCAC CGTCAGCGGTTATCTTGATCAATTCCTCATGGTCTTGTTTCTCAATGCACAGGATCTCGGTCTCTATTCCGTTGCAACGA CCGCTGAACGCGTGCTGGGCATCATCCCCGCCTCCATCCTCACGGTGACATTTCCCTCCGTTGCCGGCCGCTCGAAGGAT GATATTCGCGAAATTGTCGGGATTACCGCCCGTTTGACAAGCATTGTAACGACCAGCGCCGCTGTTTTTCTCGGAATCTT TGCCCCTTATTTTCTGTTGCTTTTGTATGGGCCAAAATTTGCGGAAGCGATCGTTCCTTTCCGCATTCTCCTGTTGTCAG CTCTCGTCAGCAATGCCGTAGGGACTTTCTACCAAATGTACAGCGGCTCAGGTCGGCCGGAAATCGTGACTGTTTTTGAA GCCATCGGTTTCGTCATCGCCGCGACAAGCATGGTGATATTAATACCCTTTTATGGTATCAATGGCGTTGCGATCGCGGC TGTTCTCTCCGCAGCGGGCCGTCTTATTCTGGTCCTCGGCGGACTTCCTGCCGTTCTCCATTTATCCATTCCGCGATTGA TCATTAATTGGGCAGATATCAAACGCGTCTTCCACCCATGA
Upstream 100 bases:
>100_bases ATATTATGAACCGAATGAGAGGAGAGCTTTGCGAACGCGAGGTTTTGTTCGGGTCTTTCAGTTGGTTTCTCGGTTCAACA CTCAATAAAATTTATCGATA
Downstream 100 bases:
>100_bases TGCTTGCCCGAACAGGCTGATTTTGCCATGGACACACAATCTTTCTCCGGCGAAGATCTCCTGTCACGTCTGCGCCTTGT GCTTGGCGAAAAACATGTTT
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MPIPRTHWRRAKQSIDPHETDSLQENKQQKYRSTVTRMRGLFRNQRVNSMILIASLRVVSLVTNLGTGMITAWSLGPAGR GTQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKSYYFGSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLL TFVVPVSVISYVLNGVLDGHHEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSILRP ATPFHGACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAERVLGIIPASILTVTFPSVAGRSKD DIREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYGPKFAEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFE AIGFVIAATSMVILIPFYGINGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRVFHP
Sequences:
>Translated_466_residues MPIPRTHWRRAKQSIDPHETDSLQENKQQKYRSTVTRMRGLFRNQRVNSMILIASLRVVSLVTNLGTGMITAWSLGPAGR GTQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKSYYFGSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLL TFVVPVSVISYVLNGVLDGHHEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSILRP ATPFHGACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAERVLGIIPASILTVTFPSVAGRSKD DIREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYGPKFAEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFE AIGFVIAATSMVILIPFYGINGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRVFHP >Mature_465_residues PIPRTHWRRAKQSIDPHETDSLQENKQQKYRSTVTRMRGLFRNQRVNSMILIASLRVVSLVTNLGTGMITAWSLGPAGRG TQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKSYYFGSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLLT FVVPVSVISYVLNGVLDGHHEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSILRPA TPFHGACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAERVLGIIPASILTVTFPSVAGRSKDD IREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYGPKFAEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFEA IGFVIAATSMVILIPFYGINGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRVFHP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50768; Mature: 50637
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPRTHWRRAKQSIDPHETDSLQENKQQKYRSTVTRMRGLFRNQRVNSMILIASLRVVS CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVTNLGTGMITAWSLGPAGRGTQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKSYYF HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEH GSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLLTFVVPVSVISYVLNGVLDGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC HEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSILRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ATPFHGACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAERVLG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH IIPASILTVTFPSVAGRSKDDIREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYGPKF HHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFEAIGFVIAATSMVILIPFYGI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCC NGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRVFHP CHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PIPRTHWRRAKQSIDPHETDSLQENKQQKYRSTVTRMRGLFRNQRVNSMILIASLRVVS CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LVTNLGTGMITAWSLGPAGRGTQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKSYYF HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEH GSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLLTFVVPVSVISYVLNGVLDGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC HEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSILRP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ATPFHGACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAERVLG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH IIPASILTVTFPSVAGRSKDDIREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYGPKF HHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFEAIGFVIAATSMVILIPFYGI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCC NGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRVFHP CHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA